Re: [R-sig-phylo] simulating gene trees on a given species tree and theta

to install phybase from the CRAN archive: install.packages("https://cran.r-project.org/src/contrib/Archive/phybase/phybase_1.1.tar.gz;, repos = NULL, type="source") Cécile On Dec 18, 2016, at 4:26 AM, Liam J. Revell > wrote: Hi John. I believe

Re: [R-sig-phylo] simulating gene trees on a given species tree and theta

Hi John. I believe this used to be possible using the package phybase. Unfortunately, this package was not being maintained & was removed from CRAN - however archived package versions can still be obtained (so it may be possible to install from source). All the best, Liam Liam J. Revell,

[R-sig-phylo] simulating gene trees on a given species tree and theta

Dear colleagues, I'm looking for an R package that will simulate gene trees onto a given species tree and a value of theta. I tried TreeSim, but it would use a provided tree as input. I know that DendroPy does that, but I'd prefer using R. Thanks! Carlos [[alternative HTML version