[R-sig-phylo] problem with phylock package

2014-05-02 Thread Mariana Vasconcellos
Hi all: I am using the phylock package to read and plot a BEAST tree in R. I want to remove outgroups from my plot, therefore I used the extract.clade2() from the phylock package. But, when I try to plot the new phylogeny with the extracted clade, R quits unexpectedly. I have tried to plot that

Re: [R-sig-phylo] problem with phylock package

2014-05-02 Thread Christoph Heibl
Hi Mariana, extract.clades2 hasn't been well tested. I wrote it for a specific dataset two years ago and I don't know if someone else has used it successfully. You can send me your tree off list and I'll see if I can fix it. Alternatively, you can identify the nodes concerned (?nodelabels,