[Rdkit-discuss] GetSubstructMatches()

2013-08-22 Thread S.L. Chan
Good afternoon folks, I would imagine that if you remove the hydrogens, the resulting molecule would be a substructure of the original molecule. However, when I do the following to the attached MDL mol file, there is no matches. from rdkit import Chem mol = Chem.MolFromMolFile('temp.mol',

Re: [Rdkit-discuss] GetSubstructMatches()

2013-08-22 Thread Greg Landrum
Dear Ling, On Thu, Aug 22, 2013 at 11:49 PM, S.L. Chan slch...@yahoo.com wrote: Good afternoon folks, I would imagine that if you remove the hydrogens, the resulting molecule would be a substructure of the original molecule. However, when I do the following to the attached MDL mol file,