[Rdkit-discuss] FP.ToBitString() Method Returns Bit Strings of Different Lengths

2014-09-25 Thread Dave Wood
Hi All, I have been generating explicit bit strings of RDKit fingerprints and was surprised by this result. Is this the expected behaviour? From the documentation it looks like the default length should be 2048. Interestingly if I call the RDKFingerprint method directly the lengths are all the

Re: [Rdkit-discuss] FP.ToBitString() Method Returns Bit Strings of Different Lengths

2014-09-25 Thread Greg Landrum
Hi Dave, On Thu, Sep 25, 2014 at 9:53 AM, Dave Wood davejw...@molplex.com wrote: Hi All, I have been generating explicit bit strings of RDKit fingerprints and was surprised by this result. Is this the expected behaviour? From the documentation it looks like the default length should be

Re: [Rdkit-discuss] Reaction Problem

2014-09-25 Thread Nicholas Firth
As expected a simple answer. I didn't realise the 'reagents' had to be ordered. Thanks Greg. Best, Nick Nicholas C. Firth | PhD Student | Cancer Therapeutics The Institute of Cancer Research | 15 Cotswold Road | Belmont | Sutton | Surrey | SM2 5NG T 020 8722 4033 | E

[Rdkit-discuss] two postdoc openings in chemoinformatics and bioinformatics

2014-09-25 Thread Pedro Ballester
We are looking for two postdocs. The first post is to work on the development and application of computational models for cancer pharmacogenomics: http://crcm.marseille.inserm.fr/fileadmin/Bioinformatics_Scientist_-_job_description.pdf The second post will investigate and apply computational

[Rdkit-discuss] PandasTools on Windows iPython notebook

2014-09-25 Thread Paul . Czodrowski
Dear RDKitter, on my new Windows laptop, I run into this issue: import pandas as pd import rdkit.Chem as Chem from rdkit.Chem import PandasTools = ValueErrorTraceback (most recent call last) ipython-input-6-52de9e808c94 in module() 1 import pandas as pd

Re: [Rdkit-discuss] PandasTools on Windows iPython notebook

2014-09-25 Thread Paul Emsley
On 25/09/14 18:06, paul.czodrow...@merckgroup.com wrote: Dear RDKitter, on my new Windows laptop, I run into this issue: import pandas as pd import rdkit.Chem as Chem from rdkit.Chem import PandasTools = ValueError Traceback (most recent call last) ipython-input-6-52de9e808c94in

Re: [Rdkit-discuss] PandasTools on Windows iPython notebook

2014-09-25 Thread Paul . Czodrowski
height has been deprecated. but, it works! thanks, paul!!! paul From: Paul Emsley pems...@mrc-lmb.cam.ac.uk To: rdkit-discuss@lists.sourceforge.net, Date: 25.09.2014 19:32 Subject:Re: [Rdkit-discuss] PandasTools on Windows iPython notebook On 25/09/14 18:06,