What does ssh vlsi1 which lapw1c give, what does "cat *.error" give in the case directory? _____ Professor Laurence Marks "Research is to see what everybody else has seen, and to think what nobody else has thought", Albert Szent-Gyorgi www.numis.northwestern.edu
On Sun, Sep 29, 2019, 01:17 Indranil mal <indranil....@gmail.com> wrote: > Now echo $WIENROOT is giving the $WIENROOT location. > > echo $WIENROOT/lapw* > > /home/username/WIEN2K/lapw0 /home/username/WIEN2K/lapw0_mpi > /home/username/WIEN2K/lapw0para /home/username/WIEN2K/lapw0para_lapw > /home/username/WIEN2K/lapw1 /home/username/WIEN2K/lapw1c > /home/username/WIEN2K/lapw1c_mpi /home/username/WIEN2K/lapw1cpara > /home/username/WIEN2K/lapw1_mpi /home/username/WIEN2K/lapw1para > /home/username/WIEN2K/lapw1para_lapw /home/username/WIEN2K/lapw2 > /home/username/WIEN2K/lapw2c /home/username/WIEN2K/lapw2c_mpi > /home/username/WIEN2K/lapw2cpara /home/username/WIEN2K/lapw2_mpi > /home/username/WIEN2K/lapw2para /home/username/WIEN2K/lapw2para_lapw > /home/username/WIEN2K/lapw3 /home/username/WIEN2K/lapw3c > /home/username/WIEN2K/lapw5 /home/username/WIEN2K/lapw5c > /home/username/WIEN2K/lapw7 /home/username/WIEN2K/lapw7c > /home/username/WIEN2K/lapwdm /home/username/WIEN2K/lapwdmc > /home/username/WIEN2K/lapwdmcpara /home/username/WIEN2K/lapwdmpara > /home/username/WIEN2K/lapwdmpara_lapw /home/username/WIEN2K/lapwso > /home/username/WIEN2K/lapwsocpara /home/username/WIEN2K/lapwso_mpi > /home/username/WIEN2K/lapwsopara /home/username/WIEN2K/lapwsopara_lapw > > ssh vlsi1 'echo $WIENROOT/lapw*' > > /home/username/WIEN2K/lapw0 /home/username/WIEN2K/lapw0_mpi > /home/username/WIEN2K/lapw0para /home/username/WIEN2K/lapw0para_lapw > /home/username/WIEN2K/lapw1 /home/username/WIEN2K/lapw1c > /home/username/WIEN2K/lapw1c_mpi /home/username/WIEN2K/lapw1cpara > /home/username/WIEN2K/lapw1_mpi /home/username/WIEN2K/lapw1para > /home/username/WIEN2K/lapw1para_lapw /home/username/WIEN2K/lapw2 > /home/username/WIEN2K/lapw2c /home/username/WIEN2K/lapw2c_mpi > /home/username/WIEN2K/lapw2cpara /home/username/WIEN2K/lapw2_mpi > /home/username/WIEN2K/lapw2para /home/username/WIEN2K/lapw2para_lapw > /home/username/WIEN2K/lapw3 /home/username/WIEN2K/lapw3c > /home/username/WIEN2K/lapw5 /home/username/WIEN2K/lapw5c > /home/username/WIEN2K/lapw7 /home/username/WIEN2K/lapw7c > /home/username/WIEN2K/lapwdm /home/username/WIEN2K/lapwdmc > /home/username/WIEN2K/lapwdmcpara /home/username/WIEN2K/lapwdmpara > /home/username/WIEN2K/lapwdmpara_lapw /home/username/WIEN2K/lapwso > /home/username/WIEN2K/lapwsocpara /home/username/WIEN2K/lapwso_mpi > /home/username/WIEN2K/lapwsopara /home/username/WIEN2K/lapwsopara_lapw > > > However getting the same error > > > > stop error > > grep: *scf1*: No such file or directory > cp: cannot stat '.in.tmp': No such file or directory > FERMI - Error > grep: *scf1*: No such file or directory > Parallel.scf1_1: No such file or directory. > bash: fixerror_lapw: command not found > bash: lapw1c: command not found > bash: fixerror_lapw: command not found > bash: lapw1c: command not found > bash: fixerror_lapw: command not found > bash: lapw1c: command not found > bash: fixerror_lapw: command not found > bash: lapw1c: command not found > bash: fixerror_lapw: command not found > bash: lapw1c: command not found > bash: fixerror_lapw: command not found > bash: lapw1c: command not found > LAPW0 END > hup: Command not found. > > > and lapw2 error file > > 'LAPW2' - can't open unit: 30 > > 'LAPW2' - filename: Parallel.energy_1 > > ** testerror: Error in Parallel LAPW2 > > > On Sat, Sep 28, 2019 at 11:58 PM Gavin Abo <gs...@crimson.ua.edu> wrote: > >> The "sudo service sshd restart" step, which I forgot to copy and paste, >> that is missing is corrected below. >> On 9/28/2019 12:18 PM, Gavin Abo wrote: >> >> After you set both "SendEnv *" and "AcceptEnv *", did you restart the >> sshd service [1]? The following illustrates steps that might help you >> verify that WIENROOT appears on a remote vlsi node: >> >> username@computername:~$ echo $WIENROOT >> >> username@computername:~$ export WIENROOT=/servernode1 >> username@computername:~$ echo $WIENROOT >> /servernode1 >> username@computername:~$ ssh vlsi >> Welcome to Ubuntu 18.04.3 LTS (GNU/Linux 4.15.0-64-generic x86_64) >> ... >> Last login: Sat Sep 28 12:04:07 2019 from xxx.x.x.x >> username@computername:~$ echo $WIENROOT >> >> username@computername:~$ exit >> logout >> Connection to vlsi closed. >> username@computername:~$ sudo gedit /etc/ssh/ssh_config >> [sudo] password for username: >> >> username@computername:~$ sudo gedit /etc/ssh/sshd_config >> >> username@computername:~$ grep SendEnv /etc/ssh/ssh_config >> SendEnv LANG LC_* WIENROOT >> username@computername:~$ grep AcceptEnv /etc/ssh/sshd_config >> AcceptEnv LANG LC_* WIENROOT >> >> username@computername:~$ sudo service sshd restart >> >> username@computername:~$ ssh vlsi >> ... >> username@computername:~$ echo $WIENROOT >> /servernode1 >> username@computername:~$ exit >> >> [1] >> https://askubuntu.com/questions/462968/take-changes-in-file-sshd-config-file-without-server-reboot >> <https://urldefense.proofpoint.com/v2/url?u=https-3A__askubuntu.com_questions_462968_take-2Dchanges-2Din-2Dfile-2Dsshd-2Dconfig-2Dfile-2Dwithout-2Dserver-2Dreboot&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=FLliCLwqxudgCchv5BCSfVP-J7BhHgTh4n7QZlioHSc&e=> >> On 9/28/2019 11:22 AM, Indranil mal wrote: >> >> Sir I have tried with " SetEnv * " Still nothing is coming with echo >> commad and user name by mistake I posted wrong Otherwise no issue with >> user name and I have set the parallel options file taksset "no" and remote >> options are 1 1 in server and client machines. >> >> >> On Sat, 28 Sep 2019 11:36 Gavin Abo, <gs...@crimson.ua.edu> wrote: >> >>> Respected Sir, In my linux(Ubuntu 18.04 LTS) in ssh_config, and in >>> sshd_config there are two line already "SendEnv LANG LC_*" "AcceptEnv LANG >>> LC_*" respectively. >>> >>> The "LANG LC_*" probably only puts just the local language variables in >>> the remote environment. Did you follow the previous advice [1] of trying >>> to use "*" to put all variables from the local environment? >>> >>> [1] >>> https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19049.html >>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.mail-2Darchive.com_wien-40zeus.theochem.tuwien.ac.at_msg19049.html&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=F2Kzs7Ld5paBoEnONGhjuu1Gkmmzcm97Ym-J9K4SEZI&e=> >>> >>> However, ssh vsli1 'echo $WIENROOT' gives nothing (blank). >>> >>> That seems to be the main cause of the problem as it should not return >>> (blank) but needs to return "/servernode1" as you previously mentioned [2]. >>> >>> [2] >>> https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19036.html >>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.mail-2Darchive.com_wien-40zeus.theochem.tuwien.ac.at_msg19036.html&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=vGl31Rca7NV32sDbba9qX9Fj6fpuj8KtDG8FBeL1emI&e=> >>> >>> Perhaps the message below is a clue. It you had set the WIENROOT >>> variable in .bashrc of your /home/vlsi accounts on each system, you likely >>> have to login and use that same /home/vlsi account on the head node as >>> the output below seems to indicate login to a different /home/niel >>> account. Alternatively, setting the WIENROOT variable in .bashrc of all >>> /home/niel accounts on each node might work too. >>> >>> The command ssh vsli1 'pwd $WIENROOT' print "/home/vlsi" the common >>> home directory and >>> ssh vlsi1 "env" >>> ... >>> USER=niel >>> PWD=/home/niel >>> HOME=/home/niel >>> ... >>> this is similar as server, and other nodes. >>> >>> Sir After changing the parallel option file in $WIENROOT in server to >>> >>> setenv TASKSET *"yes" from "no"* >>> if ( ! $?USE_REMOTE ) setenv USE_REMOTE 1 >>> if ( ! $?MPI_REMOTE ) setenv MPI_REMOTE 1 >>> setenv WIEN_GRANULARITY 1 >>> setenv DELAY 0.1 >>> setenv SLEEPY 1 >>> setenv WIEN_MPIRUN "mpirun -np _NP_ -machinefile _HOSTS_ _EXEC_" >>> setenv CORES_PER_NODE 1 >>> >>> the error is not coming but the program is not increasing steps after >>> lapw0 it stuck in lapw1 >>> >>> Since it seemed to be throwing an appropriate error message with TASKSET >>> previously unlike when set to "yes", probably you should change it back to >>> "no". >>> >> _______________________________________________ >> Wien mailing list >> Wien@zeus.theochem.tuwien.ac.at >> http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__zeus.theochem.tuwien.ac.at_mailman_listinfo_wien&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=R8E75eB_E250kh7rsujLZ73qy8ca1CUKIEvwHn35DlE&e=> >> SEARCH the MAILING-LIST at: >> http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html >> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mail-2Darchive.com_wien-40zeus.theochem.tuwien.ac.at_index.html&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=Dd_AQj1CRpawVjdP0DjOwjLe_2gCb6LP-j7gZpAsQzU&e=> >> > _______________________________________________ > Wien mailing list > Wien@zeus.theochem.tuwien.ac.at > > https://urldefense.proofpoint.com/v2/url?u=http-3A__zeus.theochem.tuwien.ac.at_mailman_listinfo_wien&d=DwICAg&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=R8E75eB_E250kh7rsujLZ73qy8ca1CUKIEvwHn35DlE&e= > SEARCH the MAILING-LIST at: > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mail-2Darchive.com_wien-40zeus.theochem.tuwien.ac.at_index.html&d=DwICAg&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=Dd_AQj1CRpawVjdP0DjOwjLe_2gCb6LP-j7gZpAsQzU&e= >
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