Checking with "which lapw1c" on each node (vlsi1, vlsi2, vlsi3, and
vlsi4) is a good idea. However, since WIENROOT is (blank) [1], it
probably won't work until that is resolved.
It was mentioned that the WIEN2k .bashrc block was setup on each node by
running userconfig [2]. So it definitely seems strange that WIENROOT is
(blank) on the client nodes since I would think it would work if both
WIENROOT and PATH are both defined from userconfig in .bashrc:
username@computername:~$ ssh vlsi1
...
username@computername:~$ cd ~/WIEN2k
username@computername:~/WIEN2k$ which lapw1c
username@computername:~/WIEN2k$ grep "export WIENROOT" ~/.bashrc
username@computername:~/WIEN2k$ grep "export PATH" ~/.bashrc
username@computername:~/WIEN2k$ ./userconfig
...
username@computername:~/WIEN2k$ grep "export WIENROOT" ~/.bashrc
export WIENROOT=/servernode1
username@computername:~/WIEN2k$ grep "export PATH" ~/.bashrc
export
PATH=$WIENROOT:$STRUCTEDIT_PATH:$WIENROOT/SRC_IRelast/script-elastic:$PATH:.
export PATH=$PATH:$WIENROOT:.
username@computername:~/WIEN2k$ source ~/.bashrc
username@computername:~/WIEN2k$ which lapw1c
/home/username/WIEN2k/lapw1c
username@computername:~/WIEN2k$ exit
logout
Connection to vlsi1 closed.
Though, I suppose if something like a conf file [3] was setup by the
user to override .bashrc or a job queue scheduler system is in use [4]
it might also cause the issue.
[1]
https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19052.html
[2]
https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19036.html
[3]
https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg08016.html
[4]
https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg15985.html
On 9/29/2019 6:11 AM, Laurence Marks wrote:
What does
ssh vlsi1 which lapw1c
give, what does "cat *.error" give in the case directory?
_____
Professor Laurence Marks
"Research is to see what everybody else has seen, and to think what
nobody else has thought", Albert Szent-Gyorgi
www.numis.northwestern.edu <http://www.numis.northwestern.edu>
On Sun, Sep 29, 2019, 01:17 Indranil mal <indranil....@gmail.com
<mailto:indranil....@gmail.com>> wrote:
Now echo $WIENROOT is giving the $WIENROOT location.
echo $WIENROOT/lapw*
/home/username/WIEN2K/lapw0 /home/username/WIEN2K/lapw0_mpi
/home/username/WIEN2K/lapw0para
/home/username/WIEN2K/lapw0para_lapw /home/username/WIEN2K/lapw1
/home/username/WIEN2K/lapw1c /home/username/WIEN2K/lapw1c_mpi
/home/username/WIEN2K/lapw1cpara /home/username/WIEN2K/lapw1_mpi
/home/username/WIEN2K/lapw1para
/home/username/WIEN2K/lapw1para_lapw /home/username/WIEN2K/lapw2
/home/username/WIEN2K/lapw2c /home/username/WIEN2K/lapw2c_mpi
/home/username/WIEN2K/lapw2cpara /home/username/WIEN2K/lapw2_mpi
/home/username/WIEN2K/lapw2para
/home/username/WIEN2K/lapw2para_lapw /home/username/WIEN2K/lapw3
/home/username/WIEN2K/lapw3c /home/username/WIEN2K/lapw5
/home/username/WIEN2K/lapw5c /home/username/WIEN2K/lapw7
/home/username/WIEN2K/lapw7c /home/username/WIEN2K/lapwdm
/home/username/WIEN2K/lapwdmc /home/username/WIEN2K/lapwdmcpara
/home/username/WIEN2K/lapwdmpara
/home/username/WIEN2K/lapwdmpara_lapw /home/username/WIEN2K/lapwso
/home/username/WIEN2K/lapwsocpara /home/username/WIEN2K/lapwso_mpi
/home/username/WIEN2K/lapwsopara /home/username/WIEN2K/lapwsopara_lapw
ssh vlsi1 'echo $WIENROOT/lapw*'
/home/username/WIEN2K/lapw0 /home/username/WIEN2K/lapw0_mpi
/home/username/WIEN2K/lapw0para
/home/username/WIEN2K/lapw0para_lapw /home/username/WIEN2K/lapw1
/home/username/WIEN2K/lapw1c /home/username/WIEN2K/lapw1c_mpi
/home/username/WIEN2K/lapw1cpara /home/username/WIEN2K/lapw1_mpi
/home/username/WIEN2K/lapw1para
/home/username/WIEN2K/lapw1para_lapw /home/username/WIEN2K/lapw2
/home/username/WIEN2K/lapw2c /home/username/WIEN2K/lapw2c_mpi
/home/username/WIEN2K/lapw2cpara /home/username/WIEN2K/lapw2_mpi
/home/username/WIEN2K/lapw2para
/home/username/WIEN2K/lapw2para_lapw /home/username/WIEN2K/lapw3
/home/username/WIEN2K/lapw3c /home/username/WIEN2K/lapw5
/home/username/WIEN2K/lapw5c /home/username/WIEN2K/lapw7
/home/username/WIEN2K/lapw7c /home/username/WIEN2K/lapwdm
/home/username/WIEN2K/lapwdmc /home/username/WIEN2K/lapwdmcpara
/home/username/WIEN2K/lapwdmpara
/home/username/WIEN2K/lapwdmpara_lapw /home/username/WIEN2K/lapwso
/home/username/WIEN2K/lapwsocpara /home/username/WIEN2K/lapwso_mpi
/home/username/WIEN2K/lapwsopara /home/username/WIEN2K/lapwsopara_lapw
However getting the same error
> stop error
grep: *scf1*: No such file or directory
cp: cannot stat '.in.tmp': No such file or directory
FERMI - Error
grep: *scf1*: No such file or directory
Parallel.scf1_1: No such file or directory.
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
bash: fixerror_lapw: command not found
bash: lapw1c: command not found
LAPW0 END
hup: Command not found.
and lapw2 error file
'LAPW2' - can't open unit: 30
'LAPW2' - filename: Parallel.energy_1
** testerror: Error in Parallel LAPW2
On Sat, Sep 28, 2019 at 11:58 PM Gavin Abo <gs...@crimson.ua.edu
<mailto:gs...@crimson.ua.edu>> wrote:
The "sudo service sshd restart" step, which I forgot to copy
and paste, that is missing is corrected below.
On 9/28/2019 12:18 PM, Gavin Abo wrote:
After you set both "SendEnv *" and "AcceptEnv *", did you
restart the sshd service [1]? The following illustrates
steps that might help you verify that WIENROOT appears on a
remote vlsi node:
username@computername:~$ echo $WIENROOT
username@computername:~$ export WIENROOT=/servernode1
username@computername:~$ echo $WIENROOT
/servernode1
username@computername:~$ ssh vlsi
Welcome to Ubuntu 18.04.3 LTS (GNU/Linux 4.15.0-64-generic
x86_64)
...
Last login: Sat Sep 28 12:04:07 2019 from xxx.x.x.x
username@computername:~$ echo $WIENROOT
username@computername:~$ exit
logout
Connection to vlsi closed.
username@computername:~$ sudo gedit /etc/ssh/ssh_config
[sudo] password for username:
username@computername:~$ sudo gedit /etc/ssh/sshd_config
username@computername:~$ grep SendEnv /etc/ssh/ssh_config
SendEnv LANG LC_* WIENROOT
username@computername:~$ grep AcceptEnv /etc/ssh/sshd_config
AcceptEnv LANG LC_* WIENROOT
username@computername:~$ sudo service sshd restart
username@computername:~$ ssh vlsi
...
username@computername:~$ echo $WIENROOT
/servernode1
username@computername:~$ exit
[1]
https://askubuntu.com/questions/462968/take-changes-in-file-sshd-config-file-without-server-reboot
<https://urldefense.proofpoint.com/v2/url?u=https-3A__askubuntu.com_questions_462968_take-2Dchanges-2Din-2Dfile-2Dsshd-2Dconfig-2Dfile-2Dwithout-2Dserver-2Dreboot&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=FLliCLwqxudgCchv5BCSfVP-J7BhHgTh4n7QZlioHSc&e=>
On 9/28/2019 11:22 AM, Indranil mal wrote:
Sir I have tried with " SetEnv * " Still nothing is coming
with echo commad and user name by mistake I posted wrong
Otherwise no issue with user name and I have set the
parallel options file taksset "no" and remote options are 1
1 in server and client machines.
On Sat, 28 Sep 2019 11:36 Gavin Abo, <gs...@crimson.ua.edu
<mailto:gs...@crimson.ua.edu>> wrote:
Respected Sir, In my linux(Ubuntu 18.04 LTS) in
ssh_config, and in sshd_config there are two line
already "SendEnv LANG LC_*" "AcceptEnv LANG LC_*"
respectively.
The "LANG LC_*" probably only puts just the local
language variables in the remote environment. Did you
follow the previous advice [1] of trying to use "*" to
put all variables from the local environment?
[1]
https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19049.html
<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.mail-2Darchive.com_wien-40zeus.theochem.tuwien.ac.at_msg19049.html&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=F2Kzs7Ld5paBoEnONGhjuu1Gkmmzcm97Ym-J9K4SEZI&e=>
However, ssh vsli1 'echo $WIENROOT' gives nothing (blank).
That seems to be the main cause of the problem as it
should not return (blank) but needs to return
"/servernode1" as you previously mentioned [2].
[2]
https://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg19036.html
<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.mail-2Darchive.com_wien-40zeus.theochem.tuwien.ac.at_msg19036.html&d=DwMFaQ&c=yHlS04HhBraes5BQ9ueu5zKhE7rtNXt_d012z2PA6ws&r=U_T4PL6jwANfAy4rnxTj8IUxm818jnvqKFdqWLwmqg0&m=BP0kuacuLbCvaswrI8sq446rvs3sVq5NP9e7yGAiTJU&s=vGl31Rca7NV32sDbba9qX9Fj6fpuj8KtDG8FBeL1emI&e=>
Perhaps the message below is a clue. It you had set the
WIENROOT variable in .bashrc of your /home/vlsi accounts
on each system, you likely have to login and use that
same /home/vlsi account on the head node as the output
below seems to indicate login to a different /home/niel
account. Alternatively, setting the WIENROOT variable in
.bashrc of all /home/niel accounts on each node might
work too.
The command ssh vsli1 'pwd $WIENROOT' print
"/home/vlsi" the common home directory and
ssh vlsi1 "env"
...
USER=niel
PWD=/home/niel
HOME=/home/niel
...
this is similar as server, and other nodes.
Sir After changing the parallel option file in
$WIENROOT in server to
setenv TASKSET *"yes" from "no"*
if ( ! $?USE_REMOTE ) setenv USE_REMOTE 1
if ( ! $?MPI_REMOTE ) setenv MPI_REMOTE 1
setenv WIEN_GRANULARITY 1
setenv DELAY 0.1
setenv SLEEPY 1
setenv WIEN_MPIRUN "mpirun -np _NP_ -machinefile
_HOSTS_ _EXEC_"
setenv CORES_PER_NODE 1
the error is not coming but the program is not
increasing steps after lapw0 it stuck in lapw1
Since it seemed to be throwing an appropriate error
message with TASKSET previously unlike when set to
"yes", probably you should change it back to "no".
_______________________________________________
Wien mailing list
Wien@zeus.theochem.tuwien.ac.at
http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
SEARCH the MAILING-LIST at:
http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
