Hi,
On Thu, Sep 15, 2011 at 9:32 AM, rahul <v.rahul.sim...@gmail.com> wrote:
> I have generated a custom CDF file. When i try reading the cel files
> using the custom CDF file, I get the following error:
does it work when you use the default/regular CDF?
/Henrik
>
>
> Error in list(`AffymetrixCelSet$byName("GBM_TCGA", cdf = cdf)` =
> <environment>, :
>
> [2011-09-15 10:33:57] Exception: Failed to setup a data set for any of
> 1 data directories located. The following reasons were reported: (1)
> Could not locate a file for this chip type: HuEx-1_0-st-v2 (while
> trying 'rawData/Dataset1/HuEx-1_0-st-v2').
> at throw(Exception(...))
> at throw.default(msg)
> at throw(msg)
> at method(static, ...)
> at AffymetrixCelSet$byName("Dataset1", cdf = cdf)
>
> CODE:
>
> library(aroma.affymetrix)
> verbose <- Arguments$getVerbose(-8, timestamp=TRUE)
>
> chipType <- "HuEx-1_0-st-v2"
> cdf <- AffymetrixCdfFile$byChipType(chipType, tag="uniqueprobes")
> cel <- AffymetrixCelSet$byName("Dataset1", cdf=cdf)
>
> --
> When reporting problems on aroma.affymetrix, make sure 1) to run the latest
> version of the package, 2) to report the output of sessionInfo() and
> traceback(), and 3) to post a complete code example.
>
>
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--
When reporting problems on aroma.affymetrix, make sure 1) to run the latest
version of the package, 2) to report the output of sessionInfo() and
traceback(), and 3) to post a complete code example.
You received this message because you are subscribed to the Google Groups
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