As Philip Mulrane wrote:

> avarice -x -2 -j usb -P atxmega128a1 -e -p -f

Programming through AVaRICE command-line options is deprecated
(use AVRDUDE for this), and no longer maintained.

> command[0x13, 1]: 13
> recv: 0x1b
> recv: 0x06
> recv: 0x00
> recv: 0x01
> recv: 0x00
> recv: 0x00
> recv: 0x00
> recv: 0x0e
> sDATA: reading 1 bytes
> read:  aa
> recv: 0x9b
> recv: 0x91
> CRC OK
> Got message seqno 6 (command_sequence == 6)
> response: AA

Command 0x13 is a chip erase (your -e option), and response
0xaa is "Illegal command".  Offhand, I've got no idea why
PDI won't be willing to chip erase, but simply drop it.
Program using AVRDUDE, and/or update the flash using GDB's
"load" command.
-- 
cheers, Joerg               .-.-.   --... ...--   -.. .  DL8DTL

http://www.sax.de/~joerg/
Never trust an operating system you don't have sources for. ;-)

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