Hi charles,
I am looking at the formats, anyways I'll have to produce a print map or reporter map for my arrays, since the output of my robot isn't neither II TAM nor MWBR. However I was going to start to enter the array design and I found I don't have the array design link in under the lims menu, I only have plate types, plates, reporter search, plate file formats, reporter map formats, and protocols. I think I should design a reporter map format, however I wonder why I dont have the array designs link. How can I make it appear? I want to use later on the baych and slides utilities. Thanks again, Diana B.
charles girardot <[EMAIL PROTECTED]> escribió:
oups sorry I was too quick: if you load a print map, you don't need a
reporter map (in the form eg of a GAL file). You should use reporter
map when you e.g. don't print the array yourself. The GAL file is what
you need to grid the arrays. It defines what's where on the array,
you'll certainly have to produce one for each design you have in
addition to the print map. But it depends what software you use for
gridding I suppose. So if you have to produce one, make sure that the
IDs you use in both the GAL file and the print map match.
More about GAL at
http://www.moleculardevices.com/pages/software/
gn_genepix_file_formats.html.
Best
C
On 19 juil. 06, at 15:33, Diana Bernal wrote:
> Hi Charles,
> Thanks for your help. I am looking at the link. What is the GAL
> file? I only have microarrays spotted here at our lab, so I am
> thinking on making a reporter map for my microarrays.
>
> Best regards, Diana Bernal
>
>
>
> charles girardot <[EMAIL PROTECTED]>escribió:
>> Hi Diana,
>>
>> Have a look at that page for file format description :
>> http://www.flychip.org.uk/protocols/robotic_spotting/fileformats.php
>>
>> For the reporter map question, simply use the GAL file of your chip
>>
>> Hope this helps
>>
>> Charles
>>
>> On 19 juil. 06, at 01:03, Diana Bernal wrote:
>>
>> > Dear helper,
>> >
>> > I work at a plant Biotechnology center at South America. We are
>> > starting to implement BASE at our lab. We have a Hitachi microarray
>> > spoter (SPBIO). Regarding array design at BASE, what are the
>> > BioRobotics II TAM' and 'MolecularWare MWBR' formats like?. Since
>> the
>> > print map of my robot is a different format, can I convert it to a
>> > 'BioRobotics II TAM' or 'MolecularWare MWBR' format? or can you make
>> > BASE to support my specific format.
>> >
>> > Also what is the format of the a "reporter map"? So that in the
>> mean
>> > time I can continue uploading an experiment and get familiar with
>> > BASE.
>> >
>> > Thanks a lot for you help.
>> >
>> > Sincerely, Diana Bernal
>> > Research Assistant
>> > International Center for Tropical Agriculture, CIAT
>> >
>> > __________________________________________________
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>>
>> =====================
>> Charles Girardot
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=====================
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