Hi Diana, I am sorry but I can't really understand what you did. They might be several things you do wrong but can't say anything based on your description.
I can send you a TAM example if you wish but I am not sure it will help you. Let s try another way. 1. Do you have a GAL file (e.g. from your spotter)? 2. Did you define all plates used for your array in BASE? 3. Did you create the ArrayDesing in BASE prior to uploading your TAM? C. On 26 juil. 06, at 19:27, Diana Bernal wrote: > Hi Charles, I've going on setting up our BASE. I finally had the > print map done on a TAM file, however when I uploaded it it says it is > un unknown file fromat, I guess I am missing some small details. I > checked the site you said for the file format, but as I said I seem to > have something missing, do you have by any chance a TAM file your self > that you could let me check?. Let me tell you how I built the TAM > file, maybe you can pick up what I did wrong. I organized the info > according to the example at > http://www.flychip.org.uk/protocols/robotic_spotting/fileformats.php, > I used excel for the mapping info, and word for the other info, then I > saved the excel files as csv. Then I took the info from the word > files, and paste it in to note pad, I also opened the csv files with > note pad and put all this together, and saved it as a csv file. Can > you think of what I did wrong. I appreciate very much your help, I > know it is a lot of work, but let me tell you we are the only lab in > Colombia, South America that has a spotter robot, so I think it is > intresting for you guys that we use BASE to handle our array data, > maybe if another lab gets their spotter here in Colombia we can help > them setting up their BASE. Thanks again, Diana Bernal > > > > rles girardot <[EMAIL PROTECTED]> escribió: >> Hi Diana, >> >> Have a look at that page for file format description : >> http://www.flychip.org.uk/protocols/robotic_spotting/fileformats.php >> >> For the reporter map question, simply use the GAL file of your chip >> >> Hope this helps >> >> Charles >> >> On 19 juil. 06, at 01:03, Diana Bernal wrote: >> >> > Dear helper, >> > >> > I work at a plant Biotechnology center at South America. We are >> > starting to implement BASE at our lab. We have a Hitachi microarray >> > spoter (SPBIO). Regarding array design at BASE, what are the >> > BioRobotics II TAM' and 'MolecularWare MWBR' formats like?. Since >> the >> > print map of my robot is a different format, can I convert it to a >> > 'BioRobotics II TAM' or 'MolecularWare MWBR' format? or can you make >> > BASE to support my specific format. >> > >> > Also what is the format of the a "reporter map"? So that in the >> mean >> > time I can continue uploading an experiment and get familiar with >> > BASE. >> > >> > Thanks a lot for you help. >> > >> > Sincerely, Diana Bernal >> > Research Assistant >> > International Center for Tropical Agriculture, CIAT >> > >> > __________________________________________________ >> > Correo Yahoo! >> > Espacio para todos tus mensajes, antivirus y antispam ¡gratis! >> > Regístrate ya - >> > http:// >> > >> correo.espanol.yahoo.com/--------------------------------------------- >> - >> > --------------------------- >> > Take Surveys. Earn Cash. Influence the Future of IT >> > Join SourceForge.net's Techsay panel and you'll get the chance to >> > share your >> > opinions on IT & business topics through brief surveys -- and earn >> cash >> > http://www.techsay.com/default.php? >> > >> page=join.php&p=sourceforge&CID=DEVDEV________________________________ >> _ >> > ______________ >> > The BASE general discussion mailing list >> > basedb-users@lists.sourceforge.net >> > unsubscribe: send a mail with subject "unsubscribe" to >> > [EMAIL PROTECTED] >> > >> Best regards, >> >> Charles >> >> ===================== >> Charles Girardot >> EMBL >> C. Boulin and E. Furlong Groups >> Tel: +49-(0)6221-387-8426 (or 8516) >> Fax: +49-(0)6221-387-8166 >> Email: [EMAIL PROTECTED] >> >> Room 602 >> Meyerhofstrasse 1 >> D-69117 Heidelberg >> Germany >> >> >> ---------------------------------------------------------------------- >> --- >> Take Surveys. Earn Cash. Influence the Future of IT >> Join SourceForge.net's Techsay panel and you'll get the chance to >> share your >> opinions on IT & business topics through brief surveys -- and earn >> cash >> http://www.techsay.com/default.php? >> page=join.php&p=sourceforge&CID=DEVDEV >> _______________________________________________ >> The BASE general discussion mailing list >> basedb-users@lists.sourceforge.net >> unsubscribe: send a mail with subject "unsubscribe" to >> [EMAIL PROTECTED] > > __________________________________________________ > Correo Yahoo! > Espacio para todos tus mensajes, antivirus y antispam ¡gratis! > Regístrate ya - > http:// > correo.espanol.yahoo.com/---------------------------------------------- > --------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to > share your > opinions on IT & business topics through brief surveys -- and earn cash > http://www.techsay.com/default.php? > page=join.php&p=sourceforge&CID=DEVDEV_________________________________ > ______________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] > Best regards, Charles ===================== Charles Girardot EMBL C. Boulin and E. Furlong Groups Tel: +49-(0)6221-387-8426 Fax: +49-(0)6221-387-8166 Email: [EMAIL PROTECTED] Room 602 Meyerhofstrasse 1 D-69117 Heidelberg Germany ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys -- and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
