thanks to Dominic, Philippe & Nicklas for the informative replies. I'll take the external ontology thing off-list with the EBI guys and we'll report back as necessary.
Nicklas Nordborg writes: > Bob MacCallum wrote: > > > > > Emmanuel Courcelle wrote: > > > > Hello > > > > > > > > Trying to use BASE with affymetrix data. > > > > me too! > > > > > > 2/ I can't see any new Reporter in the View/Reporters > > > > > > You need to import the reporter from a reporter annotation file (.csv). > > > See > > > > > http://lev.thep.lu.se/trac/baseplugins/browser/tags/se/lu/thep/affymetrix-0.6/README > > > for details. > > > > could someone point me to these .csv files please? > > > > I've downloaded the xxx_libraryfile.zip (containing a .cdf file amongst > > others) but no .csv file. Do you get this from NetAffx online? > > Just for information. Base 2.4 will include a plug-in that can create > reporters directly from a CDF file. The plug-in can only set the > probeset ID since that is the only info that is available in the CDF. To > get other annotation information you still need the .csv file(s). There > will also be validation to make sure that CEL:s are matched with the > proper CDF:s. These two things should make it easier and less > error-prone to use Affymetrix data and the RMAExpress and Plier plug-ins. > > /Nicklas > > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > [EMAIL PROTECTED] -- Bob MacCallum | VectorBase Developer | Kafatos/Christophides Groups | Division of Cell and Molecular Biology | Imperial College London | Phone +442075941945 | Email [EMAIL PROTECTED] ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to [EMAIL PROTECTED]
