Öznur Tastan <[EMAIL PROTECTED]> wrote:
:
:
: Ok: I am starting from the beginning.
I thought I had accidentally discouraged you.
: The alignment is alignment of two strings so that similar
: characters according to a scoring system (this is out of scope
: I think) should be in the same register and there can be gaps
: in one of the strings denotes as a dash.
What do you mean by "should be in the same register"? What
is a register?
: So my alignments have three features (seq1 seq2 and the score
: of the alignments)
: seq1: AADALLL
: seq2: - - EVLLL
: score:12
:
: There are groups of alignments that I want to keep separated.
: Say I have 15 alignments (the numbers and distributions can
: be changed with different input strings)
: 3 of the alignments belong to first group
: 4 of them second belong to 2nd group.
: 5 of them belong to 3rd
: 2 of them belong to 4th
: 1 of them belong to 5th)
What is a group of alignments grouped by? Is it by score
or some other quality?
: Since later on I am going to build longer alignments by taking
: one alignment from each group in order and concatenating them
: (all combinations), I need to store the alignments group by
: group. Note I know the group numbers in advance.
What are "group numbers"?
: So what approach and what data structures would you
: recommend me to use?
It's too soon to tell. You'll need to answer the questions
above to get a better answer.
HTH,
Charles K. Clarkson
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