Ok: I am starting from the beginning.
The alignment is alignment of two strings so that similiar characters according to a scoring system(this is out of scope I think) should be in the same register and there can be gaps in one of the strings denotes as a dash. so my alignments has three features(seq1 seq2 and the score of the alignments) seq1: AADALLL seq2: - - EVLLL score:12
I guess I am thick as a brick because I am more confused now then when this thread started.
How does alignment equate to score?
Only using the example given?
I await the conclusion and enlightment as this thread has proven interesting. :)
Thx/Sx
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