Öznur Tastan wrote:

so my alignments has three features(seq1 seq2 and the score of the
alignments)
seq1: AADALLL
seq2: - -  EVLLL
score:12


OK, so alignment

        L
        E

is 17 but because

        A D
        - -

The result is (12+5)-(1+4) or 12?

-Sx-

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