Why is this not "just" a function which transforms one GI into another GI? Thats what it seems to me.
On Fri, Mar 22, 2019 at 12:31 PM Luke Klein <lklei...@ucr.edu> wrote: > I am writing a package that will extend the GenomicInteractions class. I > am a statistician, so I may not know best practices when it comes to > extending existing classes (eg. should I make a new slot or simply add a > column to the `elementMetadata`? Are there existing functions that already > do what I am attempting?). > > I am not familiar with Bioc-Devel decorum, so if asking this here is > inappropriate, kindly let me know. > > About my project: > > In the first step, I am hoping to implement a HiC binning function on HiC > data contained in a GenomicInteractions set. I aim to: > > - Reorder the anchor pairs (I will explain in more detail to > anyone that wants to help) > - Collapse the regions to the desires bin width > - Sum the counts within each bin > - Update the anchors to agree with the new/updated regions > > This will set the stage for the new class that I hope to create for HiC > domain calling, but I need to achieve the above tasks first. > > All the best to everyone! > > — Luke Klein > PhD Student > Department of Statistics > University of California, Riverside > lklei...@ucr.edu > > > > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
