Perhaps others will have more to say or disagree but...
In general we never recommended automatically installing anything on a users system without them knowing (ie. You shouldn't be installing modules and packages in the onLoad and this should be removed) It should be included in the README and as an INSTALL file included in the package top level directory. Any needed module or system dependency should be assumed to be installed correctly on a users system and if you need the builders to have something installed a request made via this mailing list (Please let us know if you think something is missing and needs to be installed on the daily builders - we would generally then look for the INSTALL file on the git repository for installation instructions if it was justifiable) Right now tensorflow is unavailable on our windows server (tokay1) as we have not updated to python 3 (but will be in the near future) The windows error can be ignored for now. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Simon Dirmeier <simon.dirme...@web.de> Sent: Monday, September 2, 2019 6:08:45 AM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: [Bioc-devel] Build error due to TensorFlow installation Dear all, since I replaced some old C++ code with TensorFlow I am getting some build errors on merida1 and tokay1 regarding installation (even though I install TF and TF Probability during /.onLoad/) http://bioconductor.org/checkResults/devel/bioc-LATEST/netReg/merida1-buildsrc.html Does anyone know how I can fix this or did anyone use TF with Bioconductor so far? Many thanks in advance. Best, Simon [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
