Hi Simon, On 9/3/19 09:11, Simon Dirmeier wrote:
... Do you think it would be possible to install TensorFlow and TensorFlow-Probability on the builders? I'd assume that many would profit from that. As Lori mentioned at the end of her email (see below), we can't make the tensorflow Python module available on our Windows builders at the moment because we need to update Python to Python 3 on these machines first (AFAIK tensorflow is only available for Python 3 on Windows). This is something that we are currently working on. As for the Mac builders, we have tensorflow there but unfortunately it's an old version because recent versions of are broken on El Capitan (this is the Mac OS version that, for various reasons, we are stuck with at the moment). This prevents us from installing the tensorflow_probability module which requires a recent version of tensorflow. The tensorflow and tensorflow_probability modules are available on our Linux builders. All this means that if you replace some old C++ code with TensorFlow then we will need to mark your package as unavailable on Windows and Mac, at least for now. Sorry. I wonder if there was something wrong with this old C++ code. I would recommend that you stick to it if you can. Best, H. Right now tensorflow is unavailable on our windows server (tokay1)�as we have not updated to python 3 (but will be in the near future)� The windows error can be ignored for now. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ------------------------------------------------------------------------ *From:* Bioc-devel <bioc-devel-boun...@r-project.org><mailto:bioc-devel-boun...@r-project.org> on behalf of Simon Dirmeier <simon.dirme...@web.de><mailto:simon.dirme...@web.de> *Sent:* Monday, September 2, 2019 6:08:45 AM *To:* bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> <bioc-devel@r-project.org><mailto:bioc-devel@r-project.org> *Subject:* [Bioc-devel] Build error due to TensorFlow installation Dear all, since I replaced some old C++ code with TensorFlow I am getting some build errors on merida1 and tokay1 regarding installation (even though I install TF and TF Probability during /.onLoad/) https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_checkResults_devel_bioc-2DLATEST_netReg_merida1-2Dbuildsrc.html&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=Iy8WHNH6twF-8QkJjKa7MOIXm9mYjGg4pBlLb2CGiq8&s=wjC8b2uCm0PJgQ1LRO_CTrqNvfGKpEKN0N6QN23Sbd0&e= Does anyone know how I can fix this or did anyone use TF with Bioconductor so far? Many thanks in advance. Best, Simon ������� [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=Iy8WHNH6twF-8QkJjKa7MOIXm9mYjGg4pBlLb2CGiq8&s=98vYdk5e2ryxlWN99O68ty2dUHnoE23VPU9TwSF8rPc&e= This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=Iy8WHNH6twF-8QkJjKa7MOIXm9mYjGg4pBlLb2CGiq8&s=98vYdk5e2ryxlWN99O68ty2dUHnoE23VPU9TwSF8rPc&e= -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org<mailto:hpa...@fredhutch.org> Phone: (206) 667-5791 Fax: (206) 667-1319 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
