Hi Damian,
Looks like today the problem went away and that STRINGdb 2.2.0 is now
available on all platforms. We should still keep an eye on this for a
few more days though so we get an idea of whether this is intermittent
or gone for good.
Cheers,
H.
On 10/28/20 23:45, Pages, Herve wrote:
> Hi Damian,
>
> stringdb-static.org resolves to 185.111.60.15 on malbec1 like on
> nebbiolo1 and merida1.
>
> Also the following code runs with no problem in an interactive session
> on malbec1:
>
> > tmp <- tempfile()
> >
> download.file("https://urldefense.proofpoint.com/v2/url?u=https-3A__stringdb-2Dstatic.org_download_protein.links.v11.0_9606.protein.links.v11.0.txt.gz&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=NwTs0bD-eq0uQyUXca_bcbP1ir-B0xVXgIMxsAUsiDQ&s=5q0wAWGX7D7LgDIC36EhG47PWjTLd5JSqOKodh1FTy8&e=
> ",
> tmp)
> trying URL
> 'https://urldefense.proofpoint.com/v2/url?u=https-3A__stringdb-2Dstatic.org_download_protein.links.v11.0_9606.protein.links.v11.0.txt.gz&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=NwTs0bD-eq0uQyUXca_bcbP1ir-B0xVXgIMxsAUsiDQ&s=5q0wAWGX7D7LgDIC36EhG47PWjTLd5JSqOKodh1FTy8&e='
> Content type 'application/x-gzip' length 71241372 bytes (67.9 MB)
> ==================================================
> downloaded 67.9 MB
>
> I'm not sure why this fails in the context of the nightly builds. Let's
> hope it's just an intermittent connectivity issue between malbec1 and
> stringdb-static.org. We'll keep an eye on this.
>
> Best,
> H.
>
>
> On 10/27/20 02:15, Damian Szklarczyk wrote:
>> Dear Devel team,
>>
>> My package is failing on one of the platforms (malbec1) and I can’t
>> reproduce the problem.
>>
>> It’s a simple timeout on file download.
>> https://urldefense.proofpoint.com/v2/url?u=https-3A__www.bioconductor.org_checkResults_devel_bioc-2DLATEST_STRINGdb_malbec1-2Dchecksrc.html&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=VCJIZLg4z8KBx_40fL6k8tTqA1sdrezVR9o9tjHz11Y&s=5sxGQVYMTq8docWLZxPmXrvnPYISVOIT90tYs-Q4pcw&e=
>>
>> We have been recently DDoS’ed and in response we have changed the
>> infrastructure a bit.
>> Long story short, I think melbec1 didn’t update the DNS, and still points to
>> the attacked IP which is bandwidth limited due to the attack.
>>
>> It’s just guess, but before the DNS switch (about two weeks ago) the other
>> platforms were also failing in similar manner.
>> Is it possible to confirm that resolved IP for the failing address is the
>> same on Malbec1 as on the other platforms?
>>
>> Best regards,
>> Damian.
>>
>>
>> —
>> Damian Szklarczyk, PhD
>> Bioinformatics / Systems Biology Group
>>
>> SIB | Swiss Institute of Bioinformatics
>> UZH, Institute of Molecular Life Sciences
>> Winterthurerstrasse 190
>> 8057 Zurich, Switzerland
>>
>> Mobile: +41 788 3232 97
>> Office: +41 446 3531 49
>>
>>
>> [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel@r-project.org mailing list
>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=VCJIZLg4z8KBx_40fL6k8tTqA1sdrezVR9o9tjHz11Y&s=GtVR-YCXpuQmZBpaD5xQdIaA2_QWeUcomsphmCyEzYg&e=
>>
>
--
Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpa...@fredhutch.org
Phone: (206) 667-5791
Fax: (206) 667-1319
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
