Dear Herve,
Thank you for the feedback. The IP is indeed correct.
I’ll write if it again starts being recurring issue on one platform.
Thanks and all the best,
Damian.
--
Damian Szklarczyk, PhD
Bioinformatics / Systems Biology Group
SIB | Swiss Institute of Bioinformatics
UZH, Institute of Molecular Life Sciences
Winterthurerstrasse 190
8057 Zurich, Switzerland
Mobile: +41 788 3232 97
Office: +41 446 3531 49
> On 29 Oct 2020, at 22:39, Pages, Herve <hpa...@fredhutch.org> wrote:
>
> Hi Damian,
>
> Looks like today the problem went away and that STRINGdb 2.2.0 is now
> available on all platforms. We should still keep an eye on this for a
> few more days though so we get an idea of whether this is intermittent
> or gone for good.
>
> Cheers,
> H.
>
>
> On 10/28/20 23:45, Pages, Herve wrote:
>> Hi Damian,
>>
>> stringdb-static.org resolves to 185.111.60.15 on malbec1 like on
>> nebbiolo1 and merida1.
>>
>> Also the following code runs with no problem in an interactive session
>> on malbec1:
>>
>>> tmp <- tempfile()
>>>
>> download.file("https://urldefense.proofpoint.com/v2/url?u=https-3A__stringdb-2Dstatic.org_download_protein.links.v11.0_9606.protein.links.v11.0.txt.gz&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=NwTs0bD-eq0uQyUXca_bcbP1ir-B0xVXgIMxsAUsiDQ&s=5q0wAWGX7D7LgDIC36EhG47PWjTLd5JSqOKodh1FTy8&e=
>> ",
>> tmp)
>> trying URL
>> 'https://urldefense.proofpoint.com/v2/url?u=https-3A__stringdb-2Dstatic.org_download_protein.links.v11.0_9606.protein.links.v11.0.txt.gz&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=NwTs0bD-eq0uQyUXca_bcbP1ir-B0xVXgIMxsAUsiDQ&s=5q0wAWGX7D7LgDIC36EhG47PWjTLd5JSqOKodh1FTy8&e='
>> Content type 'application/x-gzip' length 71241372 bytes (67.9 MB)
>> ==================================================
>> downloaded 67.9 MB
>>
>> I'm not sure why this fails in the context of the nightly builds. Let's
>> hope it's just an intermittent connectivity issue between malbec1 and
>> stringdb-static.org. We'll keep an eye on this.
>>
>> Best,
>> H.
>>
>>
>> On 10/27/20 02:15, Damian Szklarczyk wrote:
>>> Dear Devel team,
>>>
>>> My package is failing on one of the platforms (malbec1) and I can’t
>>> reproduce the problem.
>>>
>>> It’s a simple timeout on file download.
>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__www.bioconductor.org_checkResults_devel_bioc-2DLATEST_STRINGdb_malbec1-2Dchecksrc.html&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=VCJIZLg4z8KBx_40fL6k8tTqA1sdrezVR9o9tjHz11Y&s=5sxGQVYMTq8docWLZxPmXrvnPYISVOIT90tYs-Q4pcw&e=
>>>
>>> We have been recently DDoS’ed and in response we have changed the
>>> infrastructure a bit.
>>> Long story short, I think melbec1 didn’t update the DNS, and still points
>>> to the attacked IP which is bandwidth limited due to the attack.
>>>
>>> It’s just guess, but before the DNS switch (about two weeks ago) the other
>>> platforms were also failing in similar manner.
>>> Is it possible to confirm that resolved IP for the failing address is the
>>> same on Malbec1 as on the other platforms?
>>>
>>> Best regards,
>>> Damian.
>>>
>>>
>>> —
>>> Damian Szklarczyk, PhD
>>> Bioinformatics / Systems Biology Group
>>>
>>> SIB | Swiss Institute of Bioinformatics
>>> UZH, Institute of Molecular Life Sciences
>>> Winterthurerstrasse 190
>>> 8057 Zurich, Switzerland
>>>
>>> Mobile: +41 788 3232 97
>>> Office: +41 446 3531 49
>>>
>>>
>>> [[alternative HTML version deleted]]
>>>
>>> _______________________________________________
>>> Bioc-devel@r-project.org mailing list
>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=VCJIZLg4z8KBx_40fL6k8tTqA1sdrezVR9o9tjHz11Y&s=GtVR-YCXpuQmZBpaD5xQdIaA2_QWeUcomsphmCyEzYg&e=
>>>
>>
>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpa...@fredhutch.org
> Phone: (206) 667-5791
> Fax: (206) 667-1319
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