It is authenticating fine except that it is greeting me as venka...@mskcc.org. Thanks.
seshanv@omega0:~$ ssh -T g...@git.bioconductor.org | head hello venka...@mskcc.org, this is git@ip-172-30-0-33 running gitolite3 v3.6.6-6-g7c8f0ab on git 2.33.0 R admin/..* R packages/..* R admin/BiocManager R admin/bioconductor.org R admin/hook_maintainer R admin/manifest R packages/ABAData R packages/ABAEnrichment On Thu, Jun 29, 2023 at 7:49 AM Kern, Lori <lori.sheph...@roswellpark.org> wrote: > sorry my previous message didn't render either... > What does the following show: > > ssh -T g...@git.bioconductor.org > > Lori Shepherd - Kern > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Venkat > Seshan <veses...@gmail.com> > *Sent:* Wednesday, June 28, 2023 5:35 PM > *To:* bioc-devel@r-project.org <bioc-devel@r-project.org> > *Subject:* Re: [Bioc-devel] DNAcopy git push issue > > I saw an error message close to mine mentioned here > > https://secure-web.cisco.com/1NegEFTMGhRUIXTRIBqpAEzGh6yJOCgtz8kTX2CCVjn-vPZfjGkLKQYzNa0w8hx5M-g8YyLDRX5APAVuE78NHrRCnzt6MAfdZbThypyWLV5W9f_hz4pPGzb0BHLZnN7nl98HZzVHKXa6e1RQGa8E9BVGTnbnE5v_rxI6iCkoWxG3dz0BmGp1KBSxf3aItnbH1rgtw_4SkpO_OtKQ1c2LC12ndM-OdJftXETAH32qVcgYb5H5qb7EaCnMv4U4FqH3jrTfpaAasBgUO72II5xoYxhhgLm-OeHcbLnEHjyCNaXbahTwyiEVfUsN4dLbbwVPP/https%3A%2F%2Fgithub.com%2FBioconductor%2Fbioc_git_transition%2Fissues%2F30 > I cloned the package using ssh and so could not be the cause. > > > > > On Wed, Jun 28, 2023 at 3:53 PM Venkat Seshan <veses...@gmail.com> wrote: > > > I noticed that my prior message was mangled by outlook and so resending > > from gmail. Thanks. > > > > I cloned the repo afresh and set up the remote. > > > > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git remote -v > > origin g...@github.com:veseshan/DNAcopy.git (fetch) > > origin g...@github.com:veseshan/DNAcopy.git (push) > > upstream g...@git.bioconductor.org:packages/DNAcopy.git > (fetch) > > upstream g...@git.bioconductor.org:packages/DNAcopy.git (push) > > > > I can run git diff and with upstream and it shows the differences as it > > should be > > > > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git diff devel upstream/devel | > > head -12 > > diff --git a/DESCRIPTION b/DESCRIPTION > > index a0219f9..c7c59a3 100644 > > --- a/DESCRIPTION > > +++ b/DESCRIPTION > > @@ -1,6 +1,6 @@ > > Package: DNAcopy > > -Title: DNA Copy Number Data Analysis > > -Version: 1.75.2 > > +Title: DNA copy number data analysis > > +Version: 1.75.1 > > Author: Venkatraman E. Seshan, Adam Olshen > > Description: Implements the circular binary segmentation (CBS) > > > > I have ensured Github has both my RSA and ED25519 keys and I can push to > > my repo and it uses SSH key appropriately. > > > > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git push > > Warning: Permanently added the ECDSA host key for IP address > > '140.82.112.3' to the list of known hosts. > > Enumerating objects: 5, done. > > Counting objects: 100% (5/5), done. > > Delta compression using up to 16 threads > > Compressing objects: 100% (3/3), done. > > Writing objects: 100% (3/3), 331 bytes | 331.00 KiB/s, done. > > Total 3 (delta 2), reused 0 (delta 0), pack-reused 0 > > remote: Resolving deltas: 100% (2/2), completed with 2 local objects. > > To github.com:veseshan/DNAcopy.git > > cdd8cfd..f953003 devel -> devel > > > > I confirmed that BiocCredentials has the SSH keys . However I am getting > > the same error when I try to push upstream > > > > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git push upstream devel > > FATAL: W any packages/DNAcopy venka...@mskcc.org DENIED by fallthru > > (or you mis-spelled the reponame) > > fatal: Could not read from remote repository. > > > > Please make sure you have the correct access rights > > and the repository exists. > > > > I can’t figure out what the issue is. > > > > Thanks > > > > On Wed, Jun 28, 2023 at 7:29 AM Kern, Lori < > lori.sheph...@roswellpark.org> > > wrote: > > > >> I'm not sure why the upstream has a mailto: at the start but perhaps > >> try resetting upstream to `g...@git.bioconductor.org: > >> packages/DNAcopy.git<mailto:g...@git.bioconductor.org > >> :packages/DNAcopy.git>` > >> > >> The credentials are set up correctly. Perhaps also adding a new ssh key > >> to the BiocCredentials account might be necessary? > >> > >> Cheers, > >> > >> > >> > >> Lori Shepherd - Kern > >> > >> Bioconductor Core Team > >> > >> Roswell Park Comprehensive Cancer Center > >> > >> Department of Biostatistics & Bioinformatics > >> > >> Elm & Carlton Streets > >> > >> Buffalo, New York 14263 > >> > >> ________________________________ > >> From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of > Seshan, > >> Venkatraman <sesh...@mskcc.org> > >> Sent: Tuesday, June 27, 2023 5:53 PM > >> To: bioc-devel@r-project.org <bioc-devel@r-project.org> > >> Subject: [Bioc-devel] DNAcopy git push issue > >> > >> After a long time of not needing any change to the package I tried to > >> push changes upstream and got the following error: > >> > >> seshanv@omega0:~/GitRepos/DNAcopy$ git push upstream devel > >> FATAL: W any packages/DNAcopy mailto:venka...@mskcc.org > <venka...@mskcc.org> DENIED by > >> fallthru > >> (or you mis-spelled the reponame) > >> fatal: Could not read from remote repository. > >> > >> Please make sure you have the correct access rights > >> and the repository exists. > >> --------------------------------------------------------- > >> > >> I haven't had the email address venka...@mskcc.org since 2007. The git > >> remotes are correct > >> > >> seshanv@omega0:~/GitRepos/DNAcopy$ git remote -v > >> origin > >> > https://secure-web.cisco.com/13GYvlJCqh6qE2EmB3eN4Edje-48SQ9VP9RDQxi8R6smN7YMfzSwExzwR71KtQC68TU3j87nJWZaQHYO9a3rbbPdF3BlW9ZcLSQEc4_xNtXCvcr7t55RYnLObQ0HqTdQeMME0pMgsINGhJUwFd3jTZvZM84FXKyIRiWpKDCqrzROjERuTjqrpnbWjvIDPM0ms5nZrKow2sZx3HZ3zjOnHGdhl5TU872hM5LOtQ4H_Yl8iTkNDoyNPYceSt_8I9yReZ50DjFAdK6Rx2sGoQW_gFl70SS1OrIYpUzbBuO4sN-IM84-6pPEB4JlF1clbBzm-/https%3A%2F%2Fgithub.com%2Fveseshan%2FDNAcopy.git > >> (fetch) > >> origin > >> > https://secure-web.cisco.com/13GYvlJCqh6qE2EmB3eN4Edje-48SQ9VP9RDQxi8R6smN7YMfzSwExzwR71KtQC68TU3j87nJWZaQHYO9a3rbbPdF3BlW9ZcLSQEc4_xNtXCvcr7t55RYnLObQ0HqTdQeMME0pMgsINGhJUwFd3jTZvZM84FXKyIRiWpKDCqrzROjERuTjqrpnbWjvIDPM0ms5nZrKow2sZx3HZ3zjOnHGdhl5TU872hM5LOtQ4H_Yl8iTkNDoyNPYceSt_8I9yReZ50DjFAdK6Rx2sGoQW_gFl70SS1OrIYpUzbBuO4sN-IM84-6pPEB4JlF1clbBzm-/https%3A%2F%2Fgithub.com%2Fveseshan%2FDNAcopy.git > >> (push) > >> upstream mailto:g...@git.bioconductor.org:packages/DNAcopy.git > <g...@git.bioconductor.org:packages/DNAcopy.git> > >> (fetch) > >> upstream mailto:g...@git.bioconductor.org:packages/DNAcopy.git > <g...@git.bioconductor.org:packages/DNAcopy.git> > >> (push) > >> --------------------------------------------------------- > >> > >> And Bioconductor Git Credentials app shows my correct email address > >> sesh...@mskcc.org > >> > >> I don't understand what the issue is. Any help in fixing this will be > >> greatly appreciated. > >> > >> Thanks, > >> Venkat Seshan > >> > >> ===================================================================== > >> > >> Please note that this e-mail and any files transmitted from > >> Memorial Sloan Kettering Cancer Center may be privileged, confidential, > >> and protected from disclosure under applicable law. If the reader of > >> this message is not the intended recipient, or an employee or agent > >> responsible for delivering this message to the intended recipient, > >> you are hereby notified that any reading, dissemination, distribution, > >> copying, or other use of this communication or any of its attachments > >> is strictly prohibited. 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Thank you. > >> [[alternative HTML version deleted]] > >> > >> _______________________________________________ > >> Bioc-devel@r-project.org mailing list > >> > https://secure-web.cisco.com/10PRvvRYn2_cjXGWIJSa4amTMT252euxka1KyoPu3aV5-hP3_ZAMQJ0N77zq_9BVlwfPnYk4OKDwsTuxPnsrGQ1AFIbi4tbBpoAimYa0c1BLHCU3e2CJ_-Ujt-yc5vc2WaeX1pqC9noD_Swn3qOxOGYScFiTpbu_sJMBPzsNfA6Qe4mu-w5JcVsT8jW9bAEDCbIAu5ONcYCr1rVoQ3brmrBxfl_fPYR3XicpAvF7Tw-68DHFzznApgtKsvZ_hEcLjCOpm20_sBf433zW6rFNMBE0lDEV-5WDzCSFl5JCUONIxhs7Ux-R63_Vx7BdtUi6y/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > >> > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > > https://secure-web.cisco.com/10PRvvRYn2_cjXGWIJSa4amTMT252euxka1KyoPu3aV5-hP3_ZAMQJ0N77zq_9BVlwfPnYk4OKDwsTuxPnsrGQ1AFIbi4tbBpoAimYa0c1BLHCU3e2CJ_-Ujt-yc5vc2WaeX1pqC9noD_Swn3qOxOGYScFiTpbu_sJMBPzsNfA6Qe4mu-w5JcVsT8jW9bAEDCbIAu5ONcYCr1rVoQ3brmrBxfl_fPYR3XicpAvF7Tw-68DHFzznApgtKsvZ_hEcLjCOpm20_sBf433zW6rFNMBE0lDEV-5WDzCSFl5JCUONIxhs7Ux-R63_Vx7BdtUi6y/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel > > > This email message may contain legally privileged and/or confidential > information. 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