Thank you for pointing me in the right direction. I deleted the old RSA ssh key generated a new one and added it to both GitHub and BiocCredentials. Now everything works.
seshanv@omega0:~$ ssh -T g...@git.bioconductor.org | head -5 hello seshanv, this is git@ip-172-30-0-33 running gitolite3 v3.6.6-6-g7c8f0ab on git 2.33.0 R admin/..* R packages/..* R admin/BiocManager and seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git push upstream devel Enumerating objects: 38, done. Counting objects: 100% (38/38), done. Delta compression using up to 16 threads Compressing objects: 100% (15/15), done. Writing objects: 100% (23/23), 5.68 KiB | 5.68 MiB/s, done. Total 23 (delta 18), reused 13 (delta 8), pack-reused 0 To git.bioconductor.org:packages/DNAcopy.git 416a2a0..f953003 devel -> devel Thank you again. Venkat On Thu, Jun 29, 2023 at 10:10 AM Venkat Seshan <veses...@gmail.com> wrote: > It is authenticating fine except that it is greeting me as > venka...@mskcc.org. Thanks. > > seshanv@omega0:~$ ssh -T g...@git.bioconductor.org | head > hello venka...@mskcc.org, this is git@ip-172-30-0-33 running gitolite3 > v3.6.6-6-g7c8f0ab on git 2.33.0 > > R admin/..* > R packages/..* > R admin/BiocManager > R admin/bioconductor.org > R admin/hook_maintainer > R admin/manifest > R packages/ABAData > R packages/ABAEnrichment > > On Thu, Jun 29, 2023 at 7:49 AM Kern, Lori <lori.sheph...@roswellpark.org> > wrote: > >> sorry my previous message didn't render either... >> What does the following show: >> >> ssh -T g...@git.bioconductor.org >> >> Lori Shepherd - Kern >> >> Bioconductor Core Team >> >> Roswell Park Comprehensive Cancer Center >> >> Department of Biostatistics & Bioinformatics >> >> Elm & Carlton Streets >> >> Buffalo, New York 14263 >> ------------------------------ >> *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of >> Venkat Seshan <veses...@gmail.com> >> *Sent:* Wednesday, June 28, 2023 5:35 PM >> *To:* bioc-devel@r-project.org <bioc-devel@r-project.org> >> *Subject:* Re: [Bioc-devel] DNAcopy git push issue >> >> I saw an error message close to mine mentioned here >> >> https://secure-web.cisco.com/1NegEFTMGhRUIXTRIBqpAEzGh6yJOCgtz8kTX2CCVjn-vPZfjGkLKQYzNa0w8hx5M-g8YyLDRX5APAVuE78NHrRCnzt6MAfdZbThypyWLV5W9f_hz4pPGzb0BHLZnN7nl98HZzVHKXa6e1RQGa8E9BVGTnbnE5v_rxI6iCkoWxG3dz0BmGp1KBSxf3aItnbH1rgtw_4SkpO_OtKQ1c2LC12ndM-OdJftXETAH32qVcgYb5H5qb7EaCnMv4U4FqH3jrTfpaAasBgUO72II5xoYxhhgLm-OeHcbLnEHjyCNaXbahTwyiEVfUsN4dLbbwVPP/https%3A%2F%2Fgithub.com%2FBioconductor%2Fbioc_git_transition%2Fissues%2F30 >> I cloned the package using ssh and so could not be the cause. >> >> >> >> >> On Wed, Jun 28, 2023 at 3:53 PM Venkat Seshan <veses...@gmail.com> wrote: >> >> > I noticed that my prior message was mangled by outlook and so resending >> > from gmail. Thanks. >> > >> > I cloned the repo afresh and set up the remote. >> > >> > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git remote -v >> > origin g...@github.com:veseshan/DNAcopy.git (fetch) >> > origin g...@github.com:veseshan/DNAcopy.git (push) >> > upstream g...@git.bioconductor.org:packages/DNAcopy.git >> (fetch) >> > upstream g...@git.bioconductor.org:packages/DNAcopy.git >> (push) >> > >> > I can run git diff and with upstream and it shows the differences as it >> > should be >> > >> > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git diff devel upstream/devel | >> > head -12 >> > diff --git a/DESCRIPTION b/DESCRIPTION >> > index a0219f9..c7c59a3 100644 >> > --- a/DESCRIPTION >> > +++ b/DESCRIPTION >> > @@ -1,6 +1,6 @@ >> > Package: DNAcopy >> > -Title: DNA Copy Number Data Analysis >> > -Version: 1.75.2 >> > +Title: DNA copy number data analysis >> > +Version: 1.75.1 >> > Author: Venkatraman E. Seshan, Adam Olshen >> > Description: Implements the circular binary segmentation (CBS) >> > >> > I have ensured Github has both my RSA and ED25519 keys and I can push to >> > my repo and it uses SSH key appropriately. >> > >> > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git push >> > Warning: Permanently added the ECDSA host key for IP address >> > '140.82.112.3' to the list of known hosts. >> > Enumerating objects: 5, done. >> > Counting objects: 100% (5/5), done. >> > Delta compression using up to 16 threads >> > Compressing objects: 100% (3/3), done. >> > Writing objects: 100% (3/3), 331 bytes | 331.00 KiB/s, done. >> > Total 3 (delta 2), reused 0 (delta 0), pack-reused 0 >> > remote: Resolving deltas: 100% (2/2), completed with 2 local objects. >> > To github.com:veseshan/DNAcopy.git >> > cdd8cfd..f953003 devel -> devel >> > >> > I confirmed that BiocCredentials has the SSH keys . However I am getting >> > the same error when I try to push upstream >> > >> > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git push upstream devel >> > FATAL: W any packages/DNAcopy venka...@mskcc.org DENIED by fallthru >> > (or you mis-spelled the reponame) >> > fatal: Could not read from remote repository. >> > >> > Please make sure you have the correct access rights >> > and the repository exists. >> > >> > I can’t figure out what the issue is. >> > >> > Thanks >> > >> > On Wed, Jun 28, 2023 at 7:29 AM Kern, Lori < >> lori.sheph...@roswellpark.org> >> > wrote: >> > >> >> I'm not sure why the upstream has a mailto: at the start but perhaps >> >> try resetting upstream to `g...@git.bioconductor.org: >> >> packages/DNAcopy.git<mailto:g...@git.bioconductor.org >> >> :packages/DNAcopy.git>` >> >> >> >> The credentials are set up correctly. Perhaps also adding a new ssh key >> >> to the BiocCredentials account might be necessary? >> >> >> >> Cheers, >> >> >> >> >> >> >> >> Lori Shepherd - Kern >> >> >> >> Bioconductor Core Team >> >> >> >> Roswell Park Comprehensive Cancer Center >> >> >> >> Department of Biostatistics & Bioinformatics >> >> >> >> Elm & Carlton Streets >> >> >> >> Buffalo, New York 14263 >> >> >> >> ________________________________ >> >> From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of >> Seshan, >> >> Venkatraman <sesh...@mskcc.org> >> >> Sent: Tuesday, June 27, 2023 5:53 PM >> >> To: bioc-devel@r-project.org <bioc-devel@r-project.org> >> >> Subject: [Bioc-devel] DNAcopy git push issue >> >> >> >> After a long time of not needing any change to the package I tried to >> >> push changes upstream and got the following error: >> >> >> >> seshanv@omega0:~/GitRepos/DNAcopy$ git push upstream devel >> >> FATAL: W any packages/DNAcopy mailto:venka...@mskcc.org >> <venka...@mskcc.org> DENIED by >> >> fallthru >> >> (or you mis-spelled the reponame) >> >> fatal: Could not read from remote repository. >> >> >> >> Please make sure you have the correct access rights >> >> and the repository exists. >> >> --------------------------------------------------------- >> >> >> >> I haven't had the email address venka...@mskcc.org since 2007. The git >> >> remotes are correct >> >> >> >> seshanv@omega0:~/GitRepos/DNAcopy$ git remote -v >> >> origin >> >> >> https://secure-web.cisco.com/13GYvlJCqh6qE2EmB3eN4Edje-48SQ9VP9RDQxi8R6smN7YMfzSwExzwR71KtQC68TU3j87nJWZaQHYO9a3rbbPdF3BlW9ZcLSQEc4_xNtXCvcr7t55RYnLObQ0HqTdQeMME0pMgsINGhJUwFd3jTZvZM84FXKyIRiWpKDCqrzROjERuTjqrpnbWjvIDPM0ms5nZrKow2sZx3HZ3zjOnHGdhl5TU872hM5LOtQ4H_Yl8iTkNDoyNPYceSt_8I9yReZ50DjFAdK6Rx2sGoQW_gFl70SS1OrIYpUzbBuO4sN-IM84-6pPEB4JlF1clbBzm-/https%3A%2F%2Fgithub.com%2Fveseshan%2FDNAcopy.git >> >> (fetch) >> >> origin >> >> >> https://secure-web.cisco.com/13GYvlJCqh6qE2EmB3eN4Edje-48SQ9VP9RDQxi8R6smN7YMfzSwExzwR71KtQC68TU3j87nJWZaQHYO9a3rbbPdF3BlW9ZcLSQEc4_xNtXCvcr7t55RYnLObQ0HqTdQeMME0pMgsINGhJUwFd3jTZvZM84FXKyIRiWpKDCqrzROjERuTjqrpnbWjvIDPM0ms5nZrKow2sZx3HZ3zjOnHGdhl5TU872hM5LOtQ4H_Yl8iTkNDoyNPYceSt_8I9yReZ50DjFAdK6Rx2sGoQW_gFl70SS1OrIYpUzbBuO4sN-IM84-6pPEB4JlF1clbBzm-/https%3A%2F%2Fgithub.com%2Fveseshan%2FDNAcopy.git >> >> (push) >> >> upstream mailto:g...@git.bioconductor.org:packages/DNAcopy.git >> <g...@git.bioconductor.org:packages/DNAcopy.git> >> >> (fetch) >> >> upstream mailto:g...@git.bioconductor.org:packages/DNAcopy.git >> <g...@git.bioconductor.org:packages/DNAcopy.git> >> >> (push) >> >> --------------------------------------------------------- >> >> >> >> And Bioconductor Git Credentials app shows my correct email address >> >> sesh...@mskcc.org >> >> >> >> I don't understand what the issue is. Any help in fixing this will be >> >> greatly appreciated. >> >> >> >> Thanks, >> >> Venkat Seshan >> >> >> >> ===================================================================== >> >> >> >> Please note that this e-mail and any files transmitted from >> >> Memorial Sloan Kettering Cancer Center may be privileged, confidential, >> >> and protected from disclosure under applicable law. If the reader of >> >> this message is not the intended recipient, or an employee or agent >> >> responsible for delivering this message to the intended recipient, >> >> you are hereby notified that any reading, dissemination, distribution, >> >> copying, or other use of this communication or any of its attachments >> >> is strictly prohibited. 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