In this iteration of the app I don't believe so I think you can only add.
Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Venkat Seshan <veses...@gmail.com> Sent: Thursday, June 29, 2023 10:30 AM To: Kern, Lori <lori.sheph...@roswellpark.org> Cc: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] DNAcopy git push issue Is there a way to remove all the old ssh keys in BiocCredentials? Thanks. On Thu, Jun 29, 2023 at 10:21 AM Kern, Lori <lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org>> wrote: excellent. good to hear! Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Venkat Seshan <veses...@gmail.com<mailto:veses...@gmail.com>> Sent: Thursday, June 29, 2023 10:24 AM To: Kern, Lori <lori.sheph...@roswellpark.org> Cc: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] DNAcopy git push issue Thank you for pointing me in the right direction. I deleted the old RSA ssh key generated a new one and added it to both GitHub and BiocCredentials. Now everything works. seshanv@omega0:~$ ssh -T g...@git.bioconductor.org<mailto:g...@git.bioconductor.org> | head -5 hello seshanv, this is git@ip-172-30-0-33 running gitolite3 v3.6.6-6-g7c8f0ab on git 2.33.0 R admin/..* R packages/..* R admin/BiocManager and seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git push upstream devel Enumerating objects: 38, done. Counting objects: 100% (38/38), done. Delta compression using up to 16 threads Compressing objects: 100% (15/15), done. Writing objects: 100% (23/23), 5.68 KiB | 5.68 MiB/s, done. Total 23 (delta 18), reused 13 (delta 8), pack-reused 0 To git.bioconductor.org:packages/DNAcopy.git 416a2a0..f953003 devel -> devel Thank you again. Venkat On Thu, Jun 29, 2023 at 10:10 AM Venkat Seshan <veses...@gmail.com<mailto:veses...@gmail.com>> wrote: It is authenticating fine except that it is greeting me as venka...@mskcc.org<mailto:venka...@mskcc.org>. Thanks. seshanv@omega0:~$ ssh -T g...@git.bioconductor.org<mailto:g...@git.bioconductor.org> | head hello venka...@mskcc.org<mailto:venka...@mskcc.org>, this is git@ip-172-30-0-33 running gitolite3 v3.6.6-6-g7c8f0ab on git 2.33.0 R admin/..* R packages/..* R admin/BiocManager R admin/bioconductor.org<http://secure-web.cisco.com/1QzN1prnKLY6gVKlXFGaCtqMR-BYfzgYeUx7gZwZ9Xbrvsj9IOOyThbd537bRAbfK1J8DNydBt4RhN0NubP8MJqXpE1N_1TNTpgHBbmBl9FxTeKb9_mxNFTj0804DJ9gqUiNyKdkmIy9p2ZRtoZrq6g67jzmPseOBudldPRoU4_4fqsqByeRgQwdZ5GtHKM3lm6BbhmSE0jDdvP1cSKtouE2_wIUVDPkwYKl6qSSX4BbE7K90IBixhM-XftgyACqCWM8ZPsccGjj7La_Rn2LlwQw1ARD3A0uK87vBSOAymlC7-CZ7iMp3V0-wQ-dakinv/http%3A%2F%2Fbioconductor.org> R admin/hook_maintainer R admin/manifest R packages/ABAData R packages/ABAEnrichment On Thu, Jun 29, 2023 at 7:49 AM Kern, Lori <lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org>> wrote: sorry my previous message didn't render either... What does the following show: ssh -T g...@git.bioconductor.org<mailto:g...@git.bioconductor.org> Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> on behalf of Venkat Seshan <veses...@gmail.com<mailto:veses...@gmail.com>> Sent: Wednesday, June 28, 2023 5:35 PM To: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: Re: [Bioc-devel] DNAcopy git push issue I saw an error message close to mine mentioned here https://secure-web.cisco.com/1NegEFTMGhRUIXTRIBqpAEzGh6yJOCgtz8kTX2CCVjn-vPZfjGkLKQYzNa0w8hx5M-g8YyLDRX5APAVuE78NHrRCnzt6MAfdZbThypyWLV5W9f_hz4pPGzb0BHLZnN7nl98HZzVHKXa6e1RQGa8E9BVGTnbnE5v_rxI6iCkoWxG3dz0BmGp1KBSxf3aItnbH1rgtw_4SkpO_OtKQ1c2LC12ndM-OdJftXETAH32qVcgYb5H5qb7EaCnMv4U4FqH3jrTfpaAasBgUO72II5xoYxhhgLm-OeHcbLnEHjyCNaXbahTwyiEVfUsN4dLbbwVPP/https%3A%2F%2Fgithub.com%2FBioconductor%2Fbioc_git_transition%2Fissues%2F30 I cloned the package using ssh and so could not be the cause. On Wed, Jun 28, 2023 at 3:53 PM Venkat Seshan <veses...@gmail.com<mailto:veses...@gmail.com>> wrote: > I noticed that my prior message was mangled by outlook and so resending > from gmail. Thanks. > > I cloned the repo afresh and set up the remote. > > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git remote -v > origin g...@github.com:veseshan/DNAcopy.git (fetch) > origin g...@github.com:veseshan/DNAcopy.git (push) > upstream g...@git.bioconductor.org:packages/DNAcopy.git (fetch) > upstream g...@git.bioconductor.org:packages/DNAcopy.git (push) > > I can run git diff and with upstream and it shows the differences as it > should be > > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git diff devel upstream/devel | > head -12 > diff --git a/DESCRIPTION b/DESCRIPTION > index a0219f9..c7c59a3 100644 > --- a/DESCRIPTION > +++ b/DESCRIPTION > @@ -1,6 +1,6 @@ > Package: DNAcopy > -Title: DNA Copy Number Data Analysis > -Version: 1.75.2 > +Title: DNA copy number data analysis > +Version: 1.75.1 > Author: Venkatraman E. Seshan, Adam Olshen > Description: Implements the circular binary segmentation (CBS) > > I have ensured Github has both my RSA and ED25519 keys and I can push to > my repo and it uses SSH key appropriately. > > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git push > Warning: Permanently added the ECDSA host key for IP address > '140.82.112.3' to the list of known hosts. > Enumerating objects: 5, done. > Counting objects: 100% (5/5), done. > Delta compression using up to 16 threads > Compressing objects: 100% (3/3), done. > Writing objects: 100% (3/3), 331 bytes | 331.00 KiB/s, done. > Total 3 (delta 2), reused 0 (delta 0), pack-reused 0 > remote: Resolving deltas: 100% (2/2), completed with 2 local objects. > To github.com:veseshan/DNAcopy.git > cdd8cfd..f953003 devel -> devel > > I confirmed that BiocCredentials has the SSH keys . However I am getting > the same error when I try to push upstream > > seshanv@omega0:~/GitRepos/Bioc/DNAcopy$ git push upstream devel > FATAL: W any packages/DNAcopy venka...@mskcc.org<mailto:venka...@mskcc.org> > DENIED by fallthru > (or you mis-spelled the reponame) > fatal: Could not read from remote repository. > > Please make sure you have the correct access rights > and the repository exists. > > I can’t figure out what the issue is. > > Thanks > > On Wed, Jun 28, 2023 at 7:29 AM Kern, Lori > <lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org>> > wrote: > >> I'm not sure why the upstream has a mailto: at the start but perhaps >> try resetting upstream to >> `g...@git.bioconductor.org<mailto:g...@git.bioconductor.org>: >> packages/DNAcopy.git<mailto:g...@git.bioconductor.org<mailto:g...@git.bioconductor.org> >> :packages/DNAcopy.git>` >> >> The credentials are set up correctly. Perhaps also adding a new ssh key >> to the BiocCredentials account might be necessary? >> >> Cheers, >> >> >> >> Lori Shepherd - Kern >> >> Bioconductor Core Team >> >> Roswell Park Comprehensive Cancer Center >> >> Department of Biostatistics & Bioinformatics >> >> Elm & Carlton Streets >> >> Buffalo, New York 14263 >> >> ________________________________ >> From: Bioc-devel >> <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> >> on behalf of Seshan, >> Venkatraman <sesh...@mskcc.org<mailto:sesh...@mskcc.org>> >> Sent: Tuesday, June 27, 2023 5:53 PM >> To: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> >> <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> >> Subject: [Bioc-devel] DNAcopy git push issue >> >> After a long time of not needing any change to the package I tried to >> push changes upstream and got the following error: >> >> seshanv@omega0:~/GitRepos/DNAcopy$ git push upstream devel >> FATAL: W any packages/DNAcopy mailto:venka...@mskcc.org DENIED by >> fallthru >> (or you mis-spelled the reponame) >> fatal: Could not read from remote repository. >> >> Please make sure you have the correct access rights >> and the repository exists. >> --------------------------------------------------------- >> >> I haven't had the email address >> venka...@mskcc.org<mailto:venka...@mskcc.org> since 2007. The git >> remotes are correct >> >> seshanv@omega0:~/GitRepos/DNAcopy$ git remote -v >> origin >> https://secure-web.cisco.com/13GYvlJCqh6qE2EmB3eN4Edje-48SQ9VP9RDQxi8R6smN7YMfzSwExzwR71KtQC68TU3j87nJWZaQHYO9a3rbbPdF3BlW9ZcLSQEc4_xNtXCvcr7t55RYnLObQ0HqTdQeMME0pMgsINGhJUwFd3jTZvZM84FXKyIRiWpKDCqrzROjERuTjqrpnbWjvIDPM0ms5nZrKow2sZx3HZ3zjOnHGdhl5TU872hM5LOtQ4H_Yl8iTkNDoyNPYceSt_8I9yReZ50DjFAdK6Rx2sGoQW_gFl70SS1OrIYpUzbBuO4sN-IM84-6pPEB4JlF1clbBzm-/https%3A%2F%2Fgithub.com%2Fveseshan%2FDNAcopy.git >> (fetch) >> origin >> https://secure-web.cisco.com/13GYvlJCqh6qE2EmB3eN4Edje-48SQ9VP9RDQxi8R6smN7YMfzSwExzwR71KtQC68TU3j87nJWZaQHYO9a3rbbPdF3BlW9ZcLSQEc4_xNtXCvcr7t55RYnLObQ0HqTdQeMME0pMgsINGhJUwFd3jTZvZM84FXKyIRiWpKDCqrzROjERuTjqrpnbWjvIDPM0ms5nZrKow2sZx3HZ3zjOnHGdhl5TU872hM5LOtQ4H_Yl8iTkNDoyNPYceSt_8I9yReZ50DjFAdK6Rx2sGoQW_gFl70SS1OrIYpUzbBuO4sN-IM84-6pPEB4JlF1clbBzm-/https%3A%2F%2Fgithub.com%2Fveseshan%2FDNAcopy.git >> (push) >> upstream mailto:g...@git.bioconductor.org:packages/DNAcopy.git >> (fetch) >> upstream mailto:g...@git.bioconductor.org:packages/DNAcopy.git >> (push) >> --------------------------------------------------------- >> >> And Bioconductor Git Credentials app shows my correct email address >> sesh...@mskcc.org<mailto:sesh...@mskcc.org> >> >> I don't understand what the issue is. Any help in fixing this will be >> greatly appreciated. >> >> Thanks, >> Venkat Seshan >> >> ===================================================================== >> >> Please note that this e-mail and any files transmitted from >> Memorial Sloan Kettering Cancer Center may be privileged, confidential, >> and protected from disclosure under applicable law. If the reader of >> this message is not the intended recipient, or an employee or agent >> responsible for delivering this message to the intended recipient, >> you are hereby notified that any reading, dissemination, distribution, >> copying, or other use of this communication or any of its attachments >> is strictly prohibited. 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