Christian Höner zu Siederdissen <choe...@tbi.univie.ac.at> writes: > yes I have a definite need to parse /huge/ amounts of tabulated BLAST > data (order of gigabytes, don't ask ;-) So, BLAST parsing would > definitely be useful. I think, we should discuss this a bit, though -- I > have become a fan of the Iteratee library and parsing such amount of > data would make Iteratee a good choice.
Yes - I've only done this by streaming through, and only handled the XML format, so it's not likely any of my stuff is very useful to you, anyway. > But if your current approach handles this as well, I'd be happy too. And > if, on the other hand you would want to concentrate on the xml part, I > could write the tabulated part. It's possible that this is better handled by separate libraries - BLAST makes different information available in the different formats, so it's likely that the data structures will need to reflect these differences - although common stuff could be factored out, of course. -k -- If I haven't seen further, it is by standing in the footprints of giants _______________________________________________ Biohaskell mailing list Biohaskell@biohaskell.org http://malde.org/cgi-bin/mailman/listinfo/biohaskell
