Hi, >Christian Hoener zu Siederdissen <choe...@tbi.univie.ac.at> writes: > >> In that case, I would put onto hackage a library "BiobaseBLAST" which >> has the Biobase.BLAST.Tabulated.* modules >> (.hs /.Import.hs / .Export.hs) with an Iteratee interface. > >Okay! > >BTW, do you wish to continue using the 'Biobase' infix and top-level >namespace? My personal opinion is that we should standardize on >bioxxxx and Bio, in the name of consistency, as well as to try to >eradicate personal ownership of code. I'd like to hear what you (both >singular and pleural) think, though.
Ok, if nobody here objects, I'll switch to naming libraries according to this plan. Btw, "bio-infernal", "bioInfernal", or what? I'd say "bio-infernal" for easier readability. And then on the module level, you find Bio.Infernal which just re-exports, and otherwise Bio.Infernal.Something.(Im/Ex)port. In general, I happily accept these things, if we get a nice common name scheme out of it, which we seem to be doing. I'll however wait with renaming a few days and continue pushing updates using the current scheme, just to give other people a chance to comment -- I think many people are on holidays? > >Anyway, I just chunked out the PSL stuff, it's about as simple as it >gets, but uses a similar (tab-separated words) format. > >> You factor out the XML part and then we check if we should put >> everything into one library? Or should we try out having one library? > >Yep. I'm not going to hurry with this, I'll pick the low hanging fruit >first. Ok, then there will be BiobaseBLAST, later on I'll switch to bio-blast and we should have just that one library doing all the blast-related stuff with both your and mine code. Though I'll just wait a bit before publishing, maybe we have some comments before long -- and I have to finish up some other things, before anyway. > >> ... It would be easier if hackage had a good way to mark librarier as >> deprecated so they don't show up anymore. Or do they have and I just >> don't know it? > >I don't think so, there's been talk about it, but AFIAK, no action. > >-k >-- >If I haven't seen further, it is by standing in the footprints of >giants _______________________________________________ >Biohaskell mailing list >Biohaskell@biohaskell.org >http://malde.org/cgi-bin/mailman/listinfo/biohaskell _______________________________________________ Biohaskell mailing list Biohaskell@biohaskell.org http://malde.org/cgi-bin/mailman/listinfo/biohaskell
