>>>>> "Greg" == Cox, Greg <[EMAIL PROTECTED]> writes:
[...]
Greg> It seems that there's an additional step of translating the
Greg> RNA strand into codons before it can be translated into
Greg> amino acids.
You're right. Something along the lines of
StrandedFeature f = (StrandedFeature) fi.next();
SymbolList rna = RNATools.transcribe(f.getSymbols());
SymbolList codons = SymbolListViews.windowedSymbolList(rna, 3);
SymbolList translation =
SymbolListViews.translate(codons,
RNATools.getGeneticCode("UNIVERSAL"));
is needed. After the various Perl APIs it made me do a double-take.
Keith
--
-= Keith James - [EMAIL PROTECTED] - http://www.sanger.ac.uk/Users/kdj =-
The Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambs CB10 1SA
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