Hi to all,
I have been having problems compiling biojava-live for that past few days
now. My ant output is like this:
compile:
[javac] Compiling 48 source files to
/Users/foisys/biojava-live/ant-build/classes/main
[javac]
/Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
ompiler.java:732: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
be applied to (boolean)
[javac] useOldMax.add( ByteCode.make_pop2(true));
[javac] ^
[javac]
/Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
ompiler.java:1000: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
be applied to (boolean)
[javac] ifSmallerThanMax.add( ByteCode.make_pop2 (true));
[javac] ^
[javac]
/Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
ompiler.java:1052: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
be applied to (boolean)
[javac] scoreIsNaN.add( ByteCode.make_pop2(true));
[javac] ^
[javac]
/Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
ompiler.java:1291: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
be applied to (boolean)
[javac] ifSmallerThanMax.add( ByteCode.make_pop2 (true));
[javac] ^
[javac]
/Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
ompiler.java:1347: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
be applied to (boolean)
[javac] scoreIsNaN.add( ByteCode.make_pop2(true));
[javac] ^
[javac] Note:
/Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/seq/io/Genbank
Format.java uses or overrides a deprecated API.
[javac] Note: Recompile with -deprecation for details.
[javac] 5 errors
I am using Mac OS X with Java 1.4.1. It compiles OK on my Linux box however.
Cordially
Sylvain
===================================================================
Sylvain Foisy, Ph. D.
Directeur - operations / Project Manager
BioneQ - Reseau quebecois de bio-informatique
U. de Montreal / Genome-Quebec
Adresse postale:
Departement de biochimie
Pavillon principal
2900, boul. Édouard-Montpetit
Montréal (Québec) H3T 1J4
Tel: (514) 343-6111 x.4066
Courriel: [EMAIL PROTECTED]
===================================================================
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