Hello, I am new to this list. I am planning to write a Java program to do some alignments. Basically, the Java program will read two files. One has a list of motif matrixes and the other has a list of sequences. My java program will scan the sequence file to find the sequence which have the high scores when they are compared with the motifs.
I hope that I can use BioJava to save time for this program and also for my future project. I have read the tutorial and JavaDoc API for several days. But, I find that I am still confused and it is hard for me to find the classes I want to use. I'll very appreciate if someone can give me some advices about how to be familiar with BioJava. Thanks a lot! Hailong -- _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
