List is nicer than arrays - use something like this:
List matricies = new ArrayList();
... loop that loads the next matrix in ... matricies.add(matrix); ... end of matrix loading loop ...
See java.util.List and java.util.Collection - also, Iterator is your friend. The sun web site has a tutorial on collections.
Matthew
Hailong Meng wrote:
Hi, Mark,
Thank you very much for your suggestions! I am so excited when I find BioJava. It is a wonderful place. Maybe I am new here, it is a little bit hard for me to find the classes I want to use. Hopefully, it will get better when I stay here a little longer.
I have one more question. I plan to search a list of motifs against a list of sequences. I got motifs from MEME and put all the motif matrixes to a file. I guess I need to put all these motif matrixes to a array of WeightMatrix. How can I do that?
Thanks.
Hailong
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