Hi Mark, But, how can I input the matrixes from the file to the class WeightMatrix. Because I did not find any method in class WeightMatrix which can do that.
Thanks again. Hailong -- On Mon, 28 Jul 2003, Matthew Pocock wrote: > Hi Hailong, > > List is nicer than arrays - use something like this: > > List matricies = new ArrayList(); > > ... loop that loads the next matrix in ... > matricies.add(matrix); > ... end of matrix loading loop ... > > See java.util.List and java.util.Collection - also, Iterator is your > friend. The sun web site has a tutorial on collections. > > Matthew > > > Hailong Meng wrote: > > > Hi, Mark, > > > > Thank you very much for your suggestions! I am so excited when I find > > BioJava. It is a wonderful place. Maybe I am new here, it is a little > > bit hard for me to find the classes I want to use. Hopefully, it will > > get better when I stay here a little longer. > > > > I have one more question. I plan to search a list of motifs against a > > list of sequences. I got motifs from MEME and put all the motif > > matrixes to a file. I guess I need to put all these motif matrixes to > > a array of WeightMatrix. How can I do that? > > > > Thanks. > > > > Hailong > > > > > _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
