Hi Tjaart,
The PDB parser currently does not parse all of the header - the HELIX
and SHEET lines containing the author's secondary
structure assignments are are currently ignored.
An alternative is simply to write a class which reads all the lines
starting with HELIX or SHEET
for the moment this might be a solution
and somehow parse them into meaningful results.
what is meaningful? :-) - in case you want to add the data to the
AminoAcid objects,
you might want to have a look at the PDB file parser and write a patch
that reads the lines and stores the
data in the amino acids. let me know if you need help.
Cheers,
Andreas
-----------------------------------------------------------------------
Andreas Prlic Wellcome Trust Sanger Institute
Hinxton, Cambridge CB10 1SA, UK
+44 (0) 1223 49 6891
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