Hi
Thanks for all the suggstions. Currently I just want to extract the
secondary structure as specified in the PDB file. I am having trouble
understanding how to utilize the AminoAcid class (after having looked at
the source...). Does anyone have an example of extracting the secondary
structure from a PDB file using the AminoAcid class in Biojava? Or any
example using the AminoAcid class to extract info from a PDB file?
Any help would be greatly appreciated!
Martin Heusel wrote:
Hi Tjaart,
you can use DSSP to determine the secondary structure from a PDB.
http://swift.cmbi.ru.nl/gv/dssp/
or maybe better use Christoph's SecondaryStructure_Predictor with biojava
http://www.charite.de/bioinf/strap/biojavaInAnger_SecondaryStructure_Predictor.html
bye
Martin
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--
Tjaart de Beer
---------
The software required "Windows XP or better" ... so I installed Linux
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