Hi - I think those scripts are particularly old. You could try getting the appropriate ones from http://code.open-bio.org/cgi/viewcvs.cgi/biosql-schema/sql/?cvsroot=biosql
You should also know that we are no longer supporting the biojava 1.4 bindings to biosql. As of biojava 1.5 we are using Hibernate to do a much better job of the ORM. You also get much better control over transactions. I strongly recommend you download biojava1.5-pre2 from http://biojava.org/wiki/BioJava:Download. For instructions on using Hibernate with Biojava take a look at http://biojava.org/wiki/BioJava:BioJavaXDocs#BioSQL_and_Hibernate. Best regards, - Mark Mark Schreiber Research Investigator (Bioinformatics) Novartis Institute for Tropical Diseases (NITD) 10 Biopolis Road #05-01 Chromos Singapore 138670 www.nitd.novartis.com www.dengueinfo.org phone +65 6722 2973 fax +65 6722 2910 Zagato <[EMAIL PROTECTED]> Sent by: [EMAIL PROTECTED] 03/02/2007 10:27 AM To: [email protected] cc: (bcc: Mark Schreiber/GP/Novartis) Subject: [Biojava-l] (pre-Singapore) BioSQL ??? Hello everyone... i'm experimenting with connection to a BioSQL database on postgres, i'm follow this guide: http://www.biojava.org/wiki/BioJava:CookBook:BioSQL:Manage, and change the parameter to connect to postrges, but i get an error and i don't know why (i download the scripts for postgres from: http://www.biojava.org/download/biosql/), my error is: org.biojava.bio.BioException: This database appears to be an old (pre-Singapore) BioSQL. If you need to access it, try an older BioJava snapshot (1.3pre1 or earlier) at org.biojava.bio.seq.db.biosql.BioSQLSequenceDB.initDb( BioSQLSequenceDB.java:227) at org.biojava.bio.seq.db.biosql.BioSQLSequenceDB.<init>( BioSQLSequenceDB.java:195) at Connect.main(Connect.java:40) I cannot using the CVS version of BioJava and can't use an older because a bug. Someone can give me some guide.... Thanks !!! Alan Acosta -- Farewell. ruby << __EOF__ puts [ 111, 116, 97, 103, 97, 90 ].collect{|v| v.chr}.join.reverse __EOF__ _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
