Thanks for the answer, i will check the hibernate alternative :D Alan
On 3/1/07, [EMAIL PROTECTED] <[EMAIL PROTECTED]> wrote: > > Hi - > > I think those scripts are particularly old. You could try getting the > appropriate ones from > http://code.open-bio.org/cgi/viewcvs.cgi/biosql-schema/sql/?cvsroot=biosql > > You should also know that we are no longer supporting the biojava 1.4 > bindings to biosql. As of biojava 1.5 we are using Hibernate to do a much > better job of the ORM. You also get much better control over transactions. > I strongly recommend you download biojava1.5-pre2 from > http://biojava.org/wiki/BioJava:Download. > > For instructions on using Hibernate with Biojava take a look at > http://biojava.org/wiki/BioJava:BioJavaXDocs#BioSQL_and_Hibernate. > > Best regards, > > - Mark > > Mark Schreiber > Research Investigator (Bioinformatics) > > Novartis Institute for Tropical Diseases (NITD) > 10 Biopolis Road > #05-01 Chromos > Singapore 138670 > www.nitd.novartis.com > www.dengueinfo.org > > phone +65 6722 2973 > fax +65 6722 2910 > > > > > > Zagato <[EMAIL PROTECTED]> > Sent by: [EMAIL PROTECTED] > 03/02/2007 10:27 AM > > > To: [email protected] > cc: (bcc: Mark Schreiber/GP/Novartis) > Subject: [Biojava-l] (pre-Singapore) BioSQL ??? > > > Hello everyone... i'm experimenting with connection to a BioSQL database > on > postgres, i'm follow this guide: > http://www.biojava.org/wiki/BioJava:CookBook:BioSQL:Manage, and change the > parameter to connect to postrges, but i get an error and i don't know why > (i > download the scripts for postgres from: > http://www.biojava.org/download/biosql/), my error is: > > org.biojava.bio.BioException: This database appears to be an old > (pre-Singapore) BioSQL. If you need to access it, try an older BioJava > snapshot (1.3pre1 or earlier) > at org.biojava.bio.seq.db.biosql.BioSQLSequenceDB.initDb( > BioSQLSequenceDB.java:227) > at org.biojava.bio.seq.db.biosql.BioSQLSequenceDB.<init>( > BioSQLSequenceDB.java:195) > at Connect.main(Connect.java:40) > > I cannot using the CVS version of BioJava and can't use an older because a > bug. Someone can give me some guide.... Thanks !!! > > Alan Acosta > > -- > Farewell. > ruby << __EOF__ > puts [ 111, 116, 97, 103, 97, 90 ].collect{|v| v.chr}.join.reverse > __EOF__ > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > > > > -- Farewell. ruby << __EOF__ puts [ 111, 116, 97, 103, 97, 90 ].collect{|v| v.chr}.join.reverse __EOF__ _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
