Hello, Found another potential error case, this time in beta2 (fresh pull from git last evening). For more info, please see http://pastie.org/1351388 for test case and stack trace. The JUnit test passes simply because the pair object is not null, but fails when trying to extract any information from the pair itself (toString(), getIdenticals(), etc). The substitution matrix file is from ftp://ftp.ncbi.nih.gov/blast/matrices. I'm doing large numbers of pairwise alignments, which do not all fail, but most do with this same error.
Thanks, Chris -- PhD Candidate, Integrative Life Sciences Virginia Commonwealth University Richmond, VA _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
