Hi Hannes, I think that depends which substitution matrix you are using. Some of them don't support ambiguity codes.
Andreas On Thu, Nov 3, 2011 at 7:17 AM, Hannes Brandstätter-Müller <[email protected]> wrote: > Does the biojava sequence alignment support IUB Codes? > http://en.wikipedia.org/wiki/FASTA_format#Sequence_representation > > Hannes > _______________________________________________ > Biojava-l mailing list - [email protected] > http://lists.open-bio.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - [email protected] http://lists.open-bio.org/mailman/listinfo/biojava-l
