That palette file format looks different from the older version AFNI palette file.
If AFNI changed their file format, then this is probably why Caret can't read it properly. I wonder if there is a way to write it out old style. On 01/24/2011 04:42 PM, Li-Wei Kuo wrote: > Hi Donna, > > Thanks so much for your reply. > After loading the palette file, I didn't see it in the list of the > palette drop-down menu. > There are still all the default colormaps. > Is it correct to load the *.pal file by "File => Open Data File"? > Do I need to do other procedure like "adding to spec file" or anything > else? > > Attached is my palette file. > Could you please check if this file is correct or not? > Again, thanks for your great helps! > > Li-Wei > > 2011/1/24 Donna Dierker <[email protected] > <mailto:[email protected]>> > > Hi Li-Wei, > > Sorry I missed your message somehow. > > After loading into Caret, the next step is to press Toolbar: D/C > and select Metric Settings from the Page Selection menu at the top. > > Near the middle of that page, there is a Palette drop-down menu, > just above Display Color Bar. (See attached capture, in which the > selection is labeled /tmp/test.pal.) > > Your custom palette should be listed at the bottom of the palette > drop-down menus. > > Donna > > -------- Original Message -------- > Subject: Fwd: [caret-users] Display fMRI with AFNI *.pal > colormap > Date: Sun, 23 Jan 2011 21:25:20 -0600 > From: David Van Essen <[email protected] > <mailto:[email protected]>> > To: Donna Dierker <[email protected] > <mailto:[email protected]>> > References: > <[email protected] > <mailto:[email protected]>> > > > > Donna, > > Is there an easy answer for this query? (I don't know the answer.) > > David > > Begin forwarded message: > > *From: *Li-Wei Kuo <[email protected] > <mailto:[email protected]> <mailto:[email protected] > <mailto:[email protected]>>> > *Date: *January 18, 2011 10:23:15 PM CST > *To: *[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > *Subject: **[caret-users] Display fMRI with AFNI *.pal colormap* > *Reply-To: *"Caret, SureFit, and SuMS software users" > <[email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>>> > > Hi all, > I would like to load AFNI *.pal files into Caret for coloring > my fMRI results. I open and load *.pal files by "File => Open > Data File". However, I cannot figure out what the next step is > to display the fMRI with my custom colormap. > Any input will be so appreciated, thank you so much! > > Best, Li-Wei _______________________________________________ > caret-users mailing list > [email protected] > <mailto:[email protected]> > <mailto:[email protected] > <mailto:[email protected]>> > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > > _______________________________________________ > caret-users mailing list > [email protected] <mailto:[email protected]> > http://brainvis.wustl.edu/mailman/listinfo/caret-users > > > ------------------------------------------------------------------------ > > _______________________________________________ > caret-users mailing list > [email protected] > http://brainvis.wustl.edu/mailman/listinfo/caret-users > _______________________________________________ caret-users mailing list [email protected] http://brainvis.wustl.edu/mailman/listinfo/caret-users
