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I would not completely condemn the supplemental material.
For example, often large data tables/spreadsheets etc are quite useful
for the community, but when they are on someone's web site,
there is no guarantee that they are preserved for posterity.
On the journal site, one might at least hope that they live
longer than on some semi-private institutional or departmental 
server.   

I see this rather as an archival issue.

br

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-----Original Message-----
From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of
Ethan Merritt
Sent: Monday, April 17, 2006 2:32 PM
To: Yoder, Marilyn
Cc: CCP4 Bulletin Board
Subject: Re: [ccp4bb]: Use of 'online supplementary material'

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On Monday 17 April 2006 01:50 pm, Yoder, Marilyn wrote:
> I read Savvas comments (below) with interest.  
> As I've been trying to write a couple of manuscripts with colleagues,  
> the 'online supplementary material' has been a focus of attention on 
> my plate.
> I must say I don't like the concept.  

Indeed.  I think the concept of online supplementary material should be
quashed as quickly and thoroughly as possible.
Not that I have much hope of convincing the journals....

I have noticed

A) The proof-reading or fact-checking in supplementary material
   is often very poor.  You point out that few readers may track
   it down; I worry that even few referees will do so.

B) The citation engines (e.g. ISI) do not capture citations in
   the supplementary material. To the extent that materials and
   methods are being relegated to the supplement, it is no longer
   possible to track the use of specific techniques, methods, 
   programs, etc, through their citations.

C) Ditto for search engines, although this must vary with the
   policies of individual journals as to whether supplementary
   material is placed where a search engine can see it.

> I guess my concern is that important information to judge the quality 
> of the data and the validity of a model are relegated to such 
> unimportant status that they don't merit ink.

Or the information that would be necessary to repeat the experiment, or
capitalize on innovative techniques.

> Frankly, I don't think a lot of readers will take additional effort to 
> track down supplementary material, and online access
> to many journals is not a trival matter.          

Well there I must part ways.  So far in my experience, journals offer online
access to supplementary material with no restriction.
So if you are already have a copy of the paper itself, access to the
supplement is not a problem. 

> Am I simply old-fashioned, or do others have similar concerns?

The issue I see is not so much the "online" aspect, but the idea of
un-reviewed, un-indexed, and un-citable sections of a research paper.
Online publication is probably inevitable, but we should strive to make it
of high quality.


--
Ethan A Merritt
Biomolecular Structure Center
University of Washington, Seattle WA


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