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Perhaps the SC program (ccp4), which is based on the publication of
Lawrence and Colman, JMB 234:946 (1993), is doing what you want. It
calculates the surface complementarity of protein/protein interfaces, if
this is what you are asking for.
-Peer
Tim Gruene wrote:
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You can use grasp or msms/Raster3D to calculate and visualise protein
surfaces.
But how would you _compare_ surfaces quantitatively?
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Tim Gruene
Institut fuer anorganische Chemie
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On Wed, 21 Jun 2006, Tea Pavkov wrote:
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Dear ccp4bb,
I would like to compare surfaces (not only ligand binding sites) of the
proteins within the same family. Do you know if there is a program doing
that or do you know people who are involved in developing something like
that?
Thank you in advance!
Tea
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Mag. Pavkov Tea
Institute of Chemistry - Structural Biology
Karl-Franzens-University Graz
Heinrichstrasse 28, 8010 Graz, Austria
Phone: ++43 316 380 5414
Fax: ++43 316 380 9850
http://PhysChem.kfunigraz.ac.at/sb
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Biochemisches Institut Fax. +41-44-635 6834
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