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I would like to superpose 2 proteins, and than quantify (in Angstrom) how big are the differences between surface features (or how similar are surfaces) ----- Original Message ----- From: "Tim Gruene" <[EMAIL PROTECTED]> To: "Tea Pavkov" <[EMAIL PROTECTED]> Cc: <[email protected]> Sent: Wednesday, June 21, 2006 1:56 PM Subject: Re: [ccp4bb]: surface comparison > You can use grasp or msms/Raster3D to calculate and visualise protein > surfaces. > But how would you _compare_ surfaces quantitatively? > > -- > Tim Gruene > Institut fuer anorganische Chemie > Tammannstr. 4 > D-37077 Goettingen > > GPG Key ID = A46BEE1A > > > On Wed, 21 Jun 2006, Tea Pavkov wrote: > > > *** For details on how to be removed from this list visit the *** > > *** CCP4 home page http://www.ccp4.ac.uk *** > > > > > > Dear ccp4bb, > > > > I would like to compare surfaces (not only ligand binding sites) of the > > proteins within the same family. Do you know if there is a program doing > > that or do you know people who are involved in developing something like > > that? > > > > Thank you in advance! > > > > Tea > > > > > > --------------------------------------------------------- > > Mag. Pavkov Tea > > Institute of Chemistry - Structural Biology > > Karl-Franzens-University Graz > > Heinrichstrasse 28, 8010 Graz, Austria > > > > Phone: ++43 316 380 5414 > > Fax: ++43 316 380 9850 > > http://PhysChem.kfunigraz.ac.at/sb > > --------------------------------------------------------- > > >
