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dear all,

I also wanted to use "superpose molecules" and I had the same failure
message.
As I'm working on Windows, maybe this problem only exists in a windows
operating system?

For superposing molecules there are a lot of programs. The reason I'm using
this CCP4 program is that I would like to have an output graph of RMSD for
each residue of the two molecules. Does anyone know another progam to do
this?

many thanks,
Petra

----- Original Message -----
From: "fang sheng" <[EMAIL PROTECTED]>
To: <[email protected]>
Sent: Thursday, August 24, 2006 5:52 PM
Subject: [ccp4bb]: TOP : "garbage on line" ?


> ***  For details on how to be removed from this list visit the  ***
> ***          CCP4 home page http://www.ccp4.ac.uk         ***
>
>
> Hello, All,
>
> I am trying to use program "TOP"( TOPP in latest version of CCP4) to
compare
> two similar structures and that is what I see in the log file when it
fails.
> " garbage on line". If you have  any experience dealing with this kind of
> problem or any idea about how to fix it, please tell me and it is greatly
> appreciated.
>
> another question is does anybody know where to get SHP program? I see from
> paper people use it to do structual comparison. Wondering if  it is better
> than TOPP.
>
> best
>
> Fang Sheng
>
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