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The "garbage on line" error message originates from the LSQKAB program rather than TOPP. (The superpose molecules task in ccp4i calls LSQKAB as well as TOPP.) If you can send me your log file and input files, I will investigate. The basic TOPP program used by ccp4i should work on both Windows and Unix based systems. The top3d and topsearch scripts mentioned in the TOPP documentation only work on unix based systems. Norman Stein CCP4 -----Original Message----- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Behalf Of Petra Wollmann Sent: 24 August 2006 17:44 To: fang sheng; [email protected] Subject: Re: [ccp4bb]: TOP : "garbage on line" ? *** For details on how to be removed from this list visit the *** *** CCP4 home page http://www.ccp4.ac.uk *** dear all, I also wanted to use "superpose molecules" and I had the same failure message. As I'm working on Windows, maybe this problem only exists in a windows operating system? For superposing molecules there are a lot of programs. The reason I'm using this CCP4 program is that I would like to have an output graph of RMSD for each residue of the two molecules. Does anyone know another progam to do this? many thanks, Petra ----- Original Message ----- From: "fang sheng" <[EMAIL PROTECTED]> To: <[email protected]> Sent: Thursday, August 24, 2006 5:52 PM Subject: [ccp4bb]: TOP : "garbage on line" ? > *** For details on how to be removed from this list visit the *** > *** CCP4 home page http://www.ccp4.ac.uk *** > > > Hello, All, > > I am trying to use program "TOP"( TOPP in latest version of CCP4) to compare > two similar structures and that is what I see in the log file when it fails. > " garbage on line". If you have any experience dealing with this kind of > problem or any idea about how to fix it, please tell me and it is greatly > appreciated. > > another question is does anybody know where to get SHP program? I see from > paper people use it to do structual comparison. Wondering if it is better > than TOPP. > > best > > Fang Sheng > > _________________________________________________________________ > Check the weather nationwide with MSN Search: Try it now! > http://search.msn.com/results.aspx?q=weather&FORM=WLMTAG > >
