[ccp4bb] per-residue RMSD calculation for homologous structure

[Srivastava, Dhiraj (MU-Student)]

Hi All
       does anyone know any software that can calculate and print out RMSD of 
every residue (c alpha will be good) for homologous structures which has only 
30-40 % sequence similarity? I looked on the web but all the software that I 
found require the sequence to be the same for both structure.

Thank you

Dhiraj