On 22:55 Fri 19 Nov , Srivastava, Dhiraj (MU-Student) wrote: > does anyone know any software that can calculate and print out RMSD of > every residue (c alpha will be good) for homologous structures which > has only 30-40 % sequence similarity? I looked on the web but all the > software that I found require the sequence to be the same for both > structure.
Try running an SSM superposition in Coot. The terminal will show the output with RMSD for each residue that aligns. -- Thanks, Donnie Donald S. Berkholz, Ph.D. Research Fellow James R. Thompson lab, Physiology & Biomedical Engineering Grazia Isaya lab, Pediatric & Adolescent Medicine Medical Sciences 2-66 Mayo Clinic College of Medicine 200 First Street SW Rochester, MN 55905 office: 507-538-6924 cell: 612-991-1321
pgpevMulh50hu.pgp
Description: PGP signature
