Dear Dhiraj; Please try the following web site
http://www.cgl.ucsf.edu/home/meng/grpmt/structalign.html Here you will find a number of option for structure base sequence alignment no matter what is the similarity of your structures. Regarding the RMSD of every residues you can find this option by using the Dalilite server. Good luck Bashir On Fri, November 19, 2010 23:55, Srivastava, Dhiraj (MU-Student) wrote: > Hi All > does anyone know any software that can calculate and print out RMSD > of every residue (c alpha will be good) for homologous structures > which has only 30-40 % sequence similarity? I looked on the web but > all the software that I found require the sequence to be the same > for both structure. > > Thank you > > Dhiraj > -- Muhammad Bashir Khan ************************************************** Department for Structural and Computational Biology Max F. Perutz Laboratories University of Vienna Campus Vienna Biocenter 5 A-1030 Vienna Austria Austria Phone: +43(1)427752224 Fax: +43(1)42779522
