SSM - see superpose task under Coordinate utilities.
This matches secondary structure and gives RMSD for CAs - inceredibly
useful program..
Eleanor
On 11/19/2010 10:55 PM, Srivastava, Dhiraj (MU-Student) wrote:
Hi All
does anyone know any software that can calculate and print out RMSD of
every residue (c alpha will be good) for homologous structures which has only
30-40 % sequence similarity? I looked on the web but all the software that I
found require the sequence to be the same for both structure.
Thank you
Dhiraj
