Give this a shot: https://www.eyesopen.com/afitt <https://www.eyesopen.com/afitt>
At least in Vida from the same suite of programs, you can select such a blob as you describe and export it in a useful way. Jürgen _______________________________________________ Jürgen Bosch, Ph.D. Division of Pediatric Pulmonology and Allergy/Immunology Case Western Reserve University 2109 Adelbert Rd, BRB 835 Cleveland, OH 44106 Phone: 216.368.7565 Fax: 216.368.4223 https://www.linkedin.com/in/jubosch/ CEO & Co-Founder at InterRayBio, LLC Johns Hopkins University Bloomberg School of Public Health Department of Biochemistry & Molecular Biology > On May 28, 2020, at 2:17 PM, Bernhard Rupp <[email protected]> wrote: > > Maybe I should explain an example: Say coot detects an unmodelled blob (maybe > a ligand). Now, I would like to do > a number of things without biasing towards a model. Like comparing these map > regions, excluding > intrusion of a solvent mask, etc. > > Now could coot for example just generate a mask around what it already knows > are blobs? > Possible useful items could be a solvent mask not including that regions, or > a density map > that includes only features with a certain boundary around that blob. > > I pilfered some kludges together from different sources, but let’s just say > inelegant would be a compliment. > > Best, BR > ------------------------ > Brief question: Does something like a visual density mask editor exist? > Thx, BR > ------------------------------------------------------ > Bernhard Rupp > http://www.hofkristallamt.org/ <http://www.hofkristallamt.org/> > [email protected] <mailto:[email protected]> > +1 925 209 7429 > +43 676 571 0536 > ------------------------------------------------------ > Many plausible ideas vanish > at the presence of thought > ------------------------------------------------------ > > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > <https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1> ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
