Yes I have already pilfered useful parts of it in the scripts.

Thx, BR

 

From: Boaz Shaanan <bshaa...@bgu.ac.il> 
Sent: Thursday, May 28, 2020 11:59
To: b...@hofkristallamt.org
Cc: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] visual mask editor - why

 

Hi Bernhard,

Did you consider trying 'polder' in the phenix package? 

Boaz

Boaz Shaanan, Ph.D.
Department of Life Sciences
Ben Gurion University of the Negev
Beer Sheva
Israel

 

On May 28, 2020 21:17, Bernhard Rupp <hofkristall...@gmail.com
<mailto:hofkristall...@gmail.com> > wrote:

Maybe I should explain an example: Say coot detects an unmodelled blob
(maybe a ligand). Now, I would like to do

a number of things without biasing towards a model. Like comparing these map
regions, excluding

intrusion of a solvent mask, etc.

 

Now could coot for example just generate a mask around what it already knows
are blobs?  

Possible useful items could be a solvent mask not including that regions, or
a density map

that includes only features with a certain boundary around that blob.

 

I pilfered some kludges together from different sources, but let's just say
inelegant would be a compliment.

 

Best, BR

------------------------

Brief question: Does something like a visual density mask editor exist?

Thx, BR

------------------------------------------------------

Bernhard Rupp

http://www.hofkristallamt.org/

b...@hofkristallamt.org <mailto:b...@hofkristallamt.org> 

+1 925 209 7429

+43 676 571 0536

------------------------------------------------------

Many plausible ideas vanish 

at the presence of thought

------------------------------------------------------

 

 

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