Dear Prof. Emsley,

thank you for estimating how much of your precious time would be needed.

I really appreciated the cross-eye stereo feature, because I could refine
my structures just everywhere using my notebook. And in our lab, I was not
bound to the few computers with 3D goggles , which were btw. crappy and
constantly failing.
I dare to say, that this feature is like a battery level indicator in the
car - it can be abandoned, but it would be too unpractical.

On the other hand, there were some other, perhaps more important issues in
Coot. For example, grabbing a certain part of peptide chains for the quick
fitting feature (into el. dens. map) in a large protein was pretty
laborious and slow, and at least I often grabbed some completely different
parts of the protein.

Also, selecting multiple amino acids on a large protein was quite difficult
- one had to constantly scroll back and forth in a small single line
window... That was quite unpractical.

I wish someone had the patience to teach me programming things like this...
I wish there wasn't so much sheer disregard like this for scientists... I
wish I could fund you for the one extra week of your work, or write a
letter to the King Charles III about how such work is worth funding...

With best regards,
---
Michal Navrátil, PhD



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st 21. 1. 2026 v 0:40 odesílatel Paul Emsley <
[email protected]> napsal:

>
> It isn't a matter of keeping it or not keeping it.
>
> It is a matter of writing it from scratch.
>
> I have had a look at what is needed and it seems that there's a good
> chance that I could implement wall-eye/cross-eye side-by-side stereo in
> something between 5 hours and a week.
>
> Paul.
> On 20/01/2026 20:58, Oganesyan, Vaheh wrote:
>
>
> --
>
> If by old-fashioned it was meant side-by-side (cross- or wall-eyed) then
> I’m 100% for it. Please keep it.
>
>
>
> Vaheh
>
>
>
> *From:* CCP4 bulletin board <[email protected]>
> <[email protected]> *On Behalf Of *Michal Navratil
> *Sent:* Tuesday, January 20, 2026 2:00 PM
> *To:* [email protected]
> *Subject:* Re: [ccp4bb] Fwd: [ccp4bb] Coot-1 stereo? Does it even exist?
> Should I add some text in from Gravity's Rainbow?
>
>
>
> I wouldn't omit the old-fashioned stereo too, very useful, very low cost,
> very efficient. Competition!
>
> ---
> Michal Navrátil, PhD
>
>
>
>
>
>
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>
> út 20. 1. 2026 v 18:08 odesílatel F. Xavier Gomis-Rüth <
> [email protected]> napsal:
>
> I would fully support Adrian's request, if possible expanding it to kindly
> request for Zalman-stereo.
> Best,
> Xavier
>
>
>
> -------- Forwarded Message --------
>
> *Subject: *
>
> [ccp4bb] Coot-1 stereo? Does it even exist? Should I add some text in from
> Gravity's Rainbow?
>
> *Date: *
>
> Tue, 20 Jan 2026 14:27:36 +0000
>
> *From: *
>
> Goldman, Adrian <[email protected]>
> <[email protected]>
>
> *Reply-To: *
>
> Goldman, Adrian <[email protected]> <[email protected]>
>
> *To: *
>
> [email protected]
>
>
>
> Hi,
>
> Let’s see if this works. I have recently upgraded (I use this word very
> ironically) to macOS Tahoe. This means that coot 0.9 no longer works,
> because that requires Xquartz. So I upgraded, as well to the latest ccp4s
> and coot-1.
>
> I am unable to find out how to turn on stereo of any kind in coot-1. Is it
> missing or am I just being stupid - if the latter, please send a screenshot
> showing how it is done!
>
> Let’s hope that this is sufficient text to beat the ccp4-server-bot, which
> said the following…
> '
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> Adrian
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