Hi Paul,

thanks for your kind reply. My experience with AI is sort of like when I
was 4 and my brother 2 - he asked me to salt his sweet cake, so I took salt
and salted it, even though he was crying and saying "no, salt!". (He meant
"sugart it")

But if I had the priviledge to code AI, I would add what I have called
limitergy and rewardergy...

Michal
---
Michal Navrátil, PhD


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so 24. 1. 2026 v 23:40 odesílatel Paul Emsley <
[email protected]> napsal:

> On 24/01/2026 20:59, Michal Navratil wrote:
>
> Hello Paul,
>
> Hello Michal,
>
>
> thank you for the kind reply.
>
> Btw. wouldn't AI-assisted coding help you?
>
> It does help me. I am part-way through a blog-post/article about it.
>
>  Americans are already pretty near this milestone - you get like the most
> of it written and than just go through it and make it perfect...
>
> There are technical limitations. This fragment of Coot is about 500k loc,
> say about 2M tokens. Using Claude, I get 200 k tokens budget - that's an
> order of magnitude less than it needs to understand the context. Or so I
> believe. I actually haven't tried asking Opus 4.5 to make the fix - maybe
> it could do it. If I tried, it would blow my budget for the rest of the
> month I imagine (and I now like programing with a Claude window open).
>
>  I think it is like with the progressive Italians making their marble
> sculptures using 400 000 USD robots - they make 99 %, but the final human
> touch makes them perfect...
>
> My experience so far has been largely the other way around, as long as I
> have put in place the groundwork, dug the foundations, as it were, it can
> do a nice job with the building and decoration.
>
> May be I will add, besides stressing how important is the cross-eye
> stereo, some other suggestions, like a hot key for moving by 10 residues
> (thanks for space forward and shift+space backward, that is awesome)
> (ctrl+space 10 forward and ctrl+shift+space 10 backward?).
>
> One of those things is not like the other! (one is 5 days (or more) and
> the other is 5 minutes (or less)).
>
> The key-bindings/shortcuts system has been re-written from scratch and is
> now flexible. Lucrezia is the doyen of all things key-binding.
>
> Anyway see attached - stick it in your ~/.config/Coot directory (and
> restart, of course).
>
> There isn't a key-code for Shift-Space so backwards is Ctrl-X. You can
> check that it's been stored using coot.print_key_bindings() in the Python
> interface.
>
> Oh, and on testing, it became apparent that it would be nice if there was
> a visual cue meaning or saying "that residue doesn't exist" - that isn't
> available in scripting (not easily, anyway). I will add something.
>
> Paul.
>
> p.s. and (Adrian) for the record, the Gravity's Rainbow reference was
> something to do with getting your message past the text filter? - with
> ironic overtones, perhaps?
>
>
>
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