Hi all, I have updated to xquartz 2.8.7 beta 3 and coot 0.9.8.96 working fine. I am using Mac Tahoe 26.6.2.
Best Kedar On Sun, Aug 23, 2026 at 12:08 AM Oliver H. Weiergräber < [email protected]> wrote: > Hello Engin and Matthew, > > Using Coot 0.9.8.96 (ccp4) on a Macbook Air M2 (running latest OS and > XQuartz, as mentioned above), this is what I am getting (see attached > screenshot). > As you can see, the bottom row (for display of status information) is > mostly drawn black, and there is an additional horizontal area on top > which should not be there. Btw, the icons displayed there are actually > copies of the main toolbar on the right, and their number may change > when resizing the window. Clearly a case of graphics corruption. > > Of course I tried deleting the .coot-preferences directory as well as > local state files, without effect. > > Best, > Oliver > > > > > > On 22.08.26 21:12, Engin Özkan wrote: > > For extra data on this, everything I could test was fine with an M1 > > MacBook Pro and Xquartz 2.8.6 (stable) on Tahoe 26.6.2. All pop-up > > windows I tried worked as intended. This is with 0.9.8.96 (installed via > > ccp4, version 9.0.017). > > > > The only issue I have is a thin row of corrupted space (same thickness > > as the menu bar) under the menu bar, or sequence viewer when turned on, > > but it does not affect usability much. An upgrade to 2.8.7beta3 does not > > fix this issue, so I would not suggest it yet. > > > > Engin > > > > > > On 8/22/26 12:41 PM, Matthew Snee wrote: > >> Hi Oliver > >> > >> I have tested two macs now using xquartz 2.8.6 and coot 0.9.8.93 EL > >> and both an M4 MAX studio and an M2 MacBook Air with the latest Tahoe. > >> > >> I tested looking at maps and some refinement features etc.. Obviously > >> I cant test everything but dialogue boxes and stuff are all working > >> fine for me. > >> > >> I'm not recommending anyone assumes it will work with their hardware, > >> but I thought everyone was in the same boat as me where it wouldn't > >> even launch? > >> > >> Best wishes > >> > >> Matthew. > >> > >> > >> Sent from Outlook for iOS <https://aka.ms/o0ukef> > >> ------------------------------------------------------------------------ > >> *From:* Oliver H. Weiergräber <[email protected]> > >> *Sent:* Saturday, August 22, 2026 6:12 pm > >> *To:* Matthew Snee <[email protected]>; > >> [email protected] <[email protected]> > >> *Subject:* Re: [ccp4bb] Quartz/Coot 0.9.8.96 > >> Dear Matthew, > >> > >> For me, using Tahoe 26.6.2 and XQuartz 2.8.6, Coot 0.9 starts up with a > >> partly corrupted workspace. > >> Are you maybe referring to XQuartz 2.8.7beta? > >> > >> Best, > >> Oliver > >> > >> > >> > >> On 21.08.26 18:27, Matthew Snee wrote: > >> > Hi All > >> > > >> > Just to let everyone know, but the latest Xquartz or Tahoe update > >> > appears to have fixed the (OpenGL) issue in Xquartz that broke Coot > 0.9 > >> > versions for mac. > >> > > >> > *Matthew Snee, PhD* > >> > > >> > Post-doctoral Research Associate > >> > > >> > > >> > The Baldock Lab | Michael Smith Building C3.214 | Wellcome Trust > Centre > >> > for Cell-Matrix Research |Division of Cell Matrix Biology & > Regenerative > >> > Medicine| School of Biological Sciences| Faculty of Biology, Medicine > >> > and Health, University of Manchester, Oxford Road, Manchester M13 9PT > >> > > >> > Lab Tel: +44 (0)161 306 2869 > >> > > >> > cell-matrix-research > >> > > >> > > >> > > ------------------------------------------------------------------------ > >> > > >> > To unsubscribe from the CCP4BB list, click the following link: > >> > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > >> > <https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1> > >> > > >> > >> > >> ------------------------------------------------------------------------ > >> > >> To unsubscribe from the CCP4BB list, click the following link: > >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > >> <https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1> > >> > > > > ------------------------------------------------------------------------ > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > <https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1> > > > > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
